Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.3.18.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.57005	0.827
27DAP/17DAP	2.35291	0.399
39DAP/27DAP	0.98888	0.84
41DAP/39DAP	1.19528	0.921
42DAP/41DAP	1.00473	1
43DAP/42DAP	1.23119	0.877
47DAP/43DAP	0.73074	0.25
52DAP/47DAP	1.44695	0.438
57DAP/52DAP	0.72355	0.727

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95164	0.55
17DAP/reference	N/A	N/A
27DAP/reference	1.82422
39DAP/reference	1.03824
41DAP/reference	1.3325	0.145
42DAP/reference	1.09941	0.504
43DAP/reference	0.63677	0.013
47DAP/reference	0.87872	0.207
52DAP/reference	0.68868	0.016
57DAP/reference	1.0849

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9205
27DAP/17DAP	N/A	N/A
39DAP/27DAP	0.72031	0.54
41DAP/39DAP	1.3953	0.79
42DAP/41DAP	0.97841	0.841
43DAP/42DAP	0.70367	0.558
47DAP/43DAP	1.17132	0.998
52DAP/47DAP	0.78886
57DAP/52DAP	N/A	N/A
57DAP/7DAP	2.57259

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	1.49708
27DAP/reference	N/A	N/A
39DAP/reference	1.77178	0.046
41DAP/reference	7.52128
42DAP/reference	N/A	N/A
43DAP/reference	N/A	N/A
47DAP/reference	N/A	N/A
52DAP/reference	N/A	N/A
57DAP/reference	0.65635	0.013

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.4063	0.852
17DAP/reference	1.23119	0.508
27DAP/reference	0.50014	0.062
39DAP/reference	1.24182
41DAP/reference	1.28472	0.221
42DAP/reference	0.98857	0.655
43DAP/reference	0.64566
47DAP/reference	N/A	N/A
52DAP/reference	0.96884	0.5
57DAP/reference	0.96815	0.789

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.84378	0.422
17DAP/reference	N/A	N/A
27DAP/reference	N/A	N/A
39DAP/reference	1.58251
41DAP/reference	N/A	N/A
42DAP/reference	2.79473
43DAP/reference	1.08929
47DAP/reference	1.06915	0.667
52DAP/reference	N/A	N/A
57DAP/reference	2.71274

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	2.06229	0.966
26DAP/20DAP	1.23386	0.319
34DAP/26DAP	1.20048	0.304
51DAP/34DAP	N/A	N/A
52DAP/51DAP	0.7647	1
53DAP/52DAP	0.66822	0.288
55DAP/53DAP	0.81856	0.149
57DAP/55DAP	1.56092	1
62DAP/57DAP	0.84604	0.871
68DAP/62DAP	N/A	N/A
68DAP/14DAP	0.87888

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.8467	0.358

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.10071	0.493
IL2-6/WTpooled	0.98748	1
IL7-5/WTpooled	1.21214	0.792
IL7-3/WTpooled	1.09456	1
IL12-4/WTpooled	1.15781	0.785
IL1-4/WTpooled	1.07406	1
WT/WTpooled	0.94905	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	0.91733
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.062	0.339
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	18.5693
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.06844	1