Expression of 1-1-6.3.19.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87994 | 0.278 |
27DAP/17DAP | 0.84754 | 0.622 |
39DAP/27DAP | 1.05878 | 1 |
41DAP/39DAP | 0.78273 | 0.322 |
42DAP/41DAP | 1.09584 | 0.92 |
43DAP/42DAP | 1.03281 | 1 |
47DAP/43DAP | 0.85595 | 0.522 |
52DAP/47DAP | 1.06877 | 0.963 |
57DAP/52DAP | 1.99168 | 0.758 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96123 | 0.589 |
17DAP/reference | 0.96416 | 0.664 |
27DAP/reference | 1.15413 | 0.771 |
39DAP/reference | 1.13889 | 0.593 |
41DAP/reference | 1.5685 | 0.203 |
42DAP/reference | 0.95131 | 0.305 |
43DAP/reference | 0.95258 | |
47DAP/reference | 1.07992 | 0.91 |
52DAP/reference | 1.33649 | 0.302 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03623 | 0.947 |
27DAP/17DAP | 1.07301 | 0.867 |
39DAP/27DAP | 0.78349 | 0.066 |
41DAP/39DAP | 1.18052 | 0.817 |
42DAP/41DAP | 0.92229 | 0.511 |
43DAP/42DAP | 0.97244 | 0.801 |
47DAP/43DAP | 0.98194 | 0.911 |
52DAP/47DAP | 0.87258 | 0.677 |
57DAP/52DAP | 1.12443 | 0.632 |
57DAP/7DAP | 0.93751 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08502 | 1 |
17DAP/reference | 0.96993 | 0.447 |
27DAP/reference | 0.90912 | 0.2 |
39DAP/reference | 1.18667 | 0.511 |
41DAP/reference | 1.10153 | 0.891 |
42DAP/reference | 1.05656 | 1 |
43DAP/reference | 0.91745 | 0.21 |
47DAP/reference | 0.91538 | 0.504 |
52DAP/reference | 0.87201 | 0.196 |
57DAP/reference | 0.81598 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97122 | 0.77 |
17DAP/reference | 1.28258 | 0.223 |
27DAP/reference | 1.31358 | 0.082 |
39DAP/reference | 1.03658 | 0.682 |
41DAP/reference | 1.17863 | 0.406 |
42DAP/reference | 1.21565 | 0.247 |
43DAP/reference | 1.05964 | 0.817 |
47DAP/reference | 1.03732 | 0.916 |
52DAP/reference | 0.88846 | 0.171 |
57DAP/reference | 0.88025 | 0.073 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00982 | 0.75 |
17DAP/reference | 0.92598 | 0.499 |
27DAP/reference | 0.86155 | 0.126 |
39DAP/reference | 0.92272 | 0.199 |
41DAP/reference | 1.09265 | 0.57 |
42DAP/reference | 1.1786 | 0.5 |
43DAP/reference | 1.12118 | 0.625 |
47DAP/reference | 1.10866 | 0.48 |
52DAP/reference | 0.92189 | 0.482 |
57DAP/reference | 1.1445 | 0.371 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99211 | 1 |
26DAP/20DAP | 1.05684 | 0.793 |
34DAP/26DAP | 0.95085 | 0.917 |
51DAP/34DAP | 1.02382 | 0.978 |
52DAP/51DAP | 0.84611 | 1 |
53DAP/52DAP | 1.15102 | 0.343 |
55DAP/53DAP | 0.8915 | 0.389 |
57DAP/55DAP | 1.41581 | 0.195 |
62DAP/57DAP | 0.88124 | 0.466 |
68DAP/62DAP | 0.83151 | 0.668 |
68DAP/14DAP | 0.87767 | 0.063 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79145 | 0.108 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14918 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.58638 | 0.034 |
Immature Eggplant/Mature Eggplant | 1.26363 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.09386 | 1 |
Mature Eggplant/Ripe Tomato | 1.56471 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.01681 | 1 |
12-2/M82 | 0.84955 | |
12-4/M82 | 0.91223 | 0.33 |
1-3/M82 | 1.42584 | |
2-1-1/M82 | 0.76262 | |
2-1/M82 | 1.11107 | |
2-6/M82 | 1.15314 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.55476 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.08548 | 1 |
5-3/M82 | 0.99366 | 1 |
6-2/M82 | 1.36573 | |
6-3/M82 | 0.83315 | 0.916 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0032 | 1 |
IL2-6/WTpooled | 1.06528 | 1 |
IL7-5/WTpooled | 1.34797 | 0.792 |
IL7-3/WTpooled | 0.79444 | 0.418 |
IL12-4/WTpooled | 0.99686 | 1 |
IL1-4/WTpooled | 0.83622 | 0.415 |
WT/WTpooled | 1.05311 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98696 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0323 | 1 |
DC3000/delta hrp 6h | 1.41698 | |
DC3000/delta hrp 12h | 0.82917 | 1 |
DC3000/delta hrp 24h | 1.09113 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.66678 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.70664 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02925 | 1 |
Exp 36h | 1.02404 | 1 |
Exp 60h | 1.29704 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.10529 | 1 |
Var 0h | 0.95898 | 1 |
Var 12h I row2-row1 | 0.77753 | 0.338 |
Var 12h NI row2-row1 | 0.88551 | 0.546 |
Var 36h I row2-row1 | 1.08912 | 0.41 |
Var 36h NI row2-row1 | 1.03616 | 1 |
Var 60h I row2-row1 | 0.91403 | 0.582 |
Var 60h NI row2-row1 | 1.00269 | 1 |
Time course 0hI-0hNI | 1.16612 | 0.574 |
Time course 12hI-12hNI | 0.95082 | 0.698 |
Time course 36hI-36hNI | 0.81359 | 0.026 |
Time course 60hI-60hNI | 0.39523 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00673 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 0.88605 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.94518 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.77299 | 0.071 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75128 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07953 | 0.087 |
Manapal/WT (break) | 1.17295 | 0.381 |
Manapal/WT (red) | 1.01947 | 1 |
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