Expression of 1-1-6.3.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.957010.689
27DAP/17DAP1.769750.877
39DAP/27DAP0.8820.529
41DAP/39DAP1.372980.125
42DAP/41DAP1.928750.073
43DAP/42DAP0.870960.479
47DAP/43DAP0.852670.522
52DAP/47DAP1.538620.449
57DAP/52DAP1.512780.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.165820.11
17DAP/reference1.064550.185
27DAP/reference1.026420.909
39DAP/reference1.015390.871
41DAP/reference1.014971
42DAP/reference1.070670.311
43DAP/reference0.8980.107
47DAP/reference0.980610.445
52DAP/reference0.949760.244
57DAP/reference1.004411

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.67070.048
27DAP/17DAP0.913340.279
39DAP/27DAP1.070410.758
41DAP/39DAP0.960230.945
42DAP/41DAP1.290430.063
43DAP/42DAP0.792130.06
47DAP/43DAP0.881190.31
52DAP/47DAP0.89530.719
57DAP/52DAP0.844670.532
57DAP/7DAP0.591211

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.393070.043
17DAP/reference1.165570.042
27DAP/reference1.05410.664
39DAP/reference1.592890.013
41DAP/reference0.997140.677
42DAP/reference1.190480.013
43DAP/reference1.302010.013
47DAP/reference1.013751
52DAP/reference1.106230.636
57DAP/reference1.134250.268

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.061940.93
17DAP/reference0.925130.106
27DAP/reference0.997330.686
39DAP/reference1.134940.263
41DAP/reference1.034721
42DAP/reference0.946580.289
43DAP/reference0.958940.478
47DAP/reference0.918470.079
52DAP/reference1.088310.393
57DAP/reference1.099870.112

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13620.18
17DAP/reference1.002690.855
27DAP/reference1.128860.408
39DAP/reference1.263890.036
41DAP/reference1.148370.069
42DAP/reference1.068170.47
43DAP/reference0.972770.568
47DAP/reference0.798770.005
52DAP/reference1.401840.241
57DAP/reference0.970110.516

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.095570.966
26DAP/20DAP1.254690.793
34DAP/26DAP1.229141
51DAP/34DAP0.777280.323
52DAP/51DAP1.153720.431
53DAP/52DAP1.694520.608
55DAP/53DAP2.091870.319
57DAP/55DAP1.161320.947
62DAP/57DAP0.910510.681
68DAP/62DAP0.959680.81
68DAP/14DAP0.816590.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.567580.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.7493
Mature Green Tomato/Ripe Tomato1.781750.015
Immature Eggplant/Mature Eggplant2.581860.05
Ripe Pepper/Ripe Tomato0.339510.224
Mature Eggplant/Ripe Tomato1.047351

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M821.56807
12-4/M820.90071
1-3/M82N/AN/A
2-1-1/M820.82289
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.35135
4-3/M821.513110.268
5-3/M820.78470.642
6-2/M821.71666
6-3/M820.73622
7-1/M821.53444
7-2/M82N/AN/A
9-3-2/M820.95441

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.232560.365
IL2-6/WTpooled0.796520.473
IL7-5/WTpooled1.072490.792
IL7-3/WTpooled1.340341
IL12-4/WTpooled1.16390.52
IL1-4/WTpooled1.191941
WT/WTpooled0.906391

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.006671

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.902841
DC3000/delta hrp 6h0.988320.95
DC3000/delta hrp 12h1.103091
DC3000/delta hrp 24h0.76960.246

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.696990.394

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.963231
Exp 36h1.157891
Exp 60h1.237790.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996861
Var 0h1.072740.936
Var 12h I row2-row11.185340.544
Var 12h NI row2-row11.138260.34
Var 36h I row2-row11.320790.339
Var 36h NI row2-row10.819180.61
Var 60h I row2-row10.967640.952
Var 60h NI row2-row10.698460.866
Time course 0hI-0hNI1.000971
Time course 12hI-12hNI0.918350.424
Time course 36hI-36hNI1.241840.355
Time course 60hI-60hNI1.618320.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.473220.287
transgenic ySAMdc/azygous control (breaker)1.198491
transgenic ySAMdc/azygous control (red)1.34490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.959440.323

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.045150.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.00481
Manapal/WT (break)0.715830.333
Manapal/WT (red)1.284590.413