Expression of 1-1-6.3.19.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95701 | 0.689 |
27DAP/17DAP | 1.76975 | 0.877 |
39DAP/27DAP | 0.882 | 0.529 |
41DAP/39DAP | 1.37298 | 0.125 |
42DAP/41DAP | 1.92875 | 0.073 |
43DAP/42DAP | 0.87096 | 0.479 |
47DAP/43DAP | 0.85267 | 0.522 |
52DAP/47DAP | 1.53862 | 0.449 |
57DAP/52DAP | 1.51278 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16582 | 0.11 |
17DAP/reference | 1.06455 | 0.185 |
27DAP/reference | 1.02642 | 0.909 |
39DAP/reference | 1.01539 | 0.871 |
41DAP/reference | 1.01497 | 1 |
42DAP/reference | 1.07067 | 0.311 |
43DAP/reference | 0.898 | 0.107 |
47DAP/reference | 0.98061 | 0.445 |
52DAP/reference | 0.94976 | 0.244 |
57DAP/reference | 1.00441 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6707 | 0.048 |
27DAP/17DAP | 0.91334 | 0.279 |
39DAP/27DAP | 1.07041 | 0.758 |
41DAP/39DAP | 0.96023 | 0.945 |
42DAP/41DAP | 1.29043 | 0.063 |
43DAP/42DAP | 0.79213 | 0.06 |
47DAP/43DAP | 0.88119 | 0.31 |
52DAP/47DAP | 0.8953 | 0.719 |
57DAP/52DAP | 0.84467 | 0.532 |
57DAP/7DAP | 0.59121 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39307 | 0.043 |
17DAP/reference | 1.16557 | 0.042 |
27DAP/reference | 1.0541 | 0.664 |
39DAP/reference | 1.59289 | 0.013 |
41DAP/reference | 0.99714 | 0.677 |
42DAP/reference | 1.19048 | 0.013 |
43DAP/reference | 1.30201 | 0.013 |
47DAP/reference | 1.01375 | 1 |
52DAP/reference | 1.10623 | 0.636 |
57DAP/reference | 1.13425 | 0.268 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06194 | 0.93 |
17DAP/reference | 0.92513 | 0.106 |
27DAP/reference | 0.99733 | 0.686 |
39DAP/reference | 1.13494 | 0.263 |
41DAP/reference | 1.03472 | 1 |
42DAP/reference | 0.94658 | 0.289 |
43DAP/reference | 0.95894 | 0.478 |
47DAP/reference | 0.91847 | 0.079 |
52DAP/reference | 1.08831 | 0.393 |
57DAP/reference | 1.09987 | 0.112 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1362 | 0.18 |
17DAP/reference | 1.00269 | 0.855 |
27DAP/reference | 1.12886 | 0.408 |
39DAP/reference | 1.26389 | 0.036 |
41DAP/reference | 1.14837 | 0.069 |
42DAP/reference | 1.06817 | 0.47 |
43DAP/reference | 0.97277 | 0.568 |
47DAP/reference | 0.79877 | 0.005 |
52DAP/reference | 1.40184 | 0.241 |
57DAP/reference | 0.97011 | 0.516 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09557 | 0.966 |
26DAP/20DAP | 1.25469 | 0.793 |
34DAP/26DAP | 1.22914 | 1 |
51DAP/34DAP | 0.77728 | 0.323 |
52DAP/51DAP | 1.15372 | 0.431 |
53DAP/52DAP | 1.69452 | 0.608 |
55DAP/53DAP | 2.09187 | 0.319 |
57DAP/55DAP | 1.16132 | 0.947 |
62DAP/57DAP | 0.91051 | 0.681 |
68DAP/62DAP | 0.95968 | 0.81 |
68DAP/14DAP | 0.81659 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.56758 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.7493 | |
Mature Green Tomato/Ripe Tomato | 1.78175 | 0.015 |
Immature Eggplant/Mature Eggplant | 2.58186 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.33951 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.04735 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.56807 | |
12-4/M82 | 0.9007 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.82289 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.35135 | |
4-3/M82 | 1.51311 | 0.268 |
5-3/M82 | 0.7847 | 0.642 |
6-2/M82 | 1.71666 | |
6-3/M82 | 0.73622 | |
7-1/M82 | 1.53444 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.95441 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.23256 | 0.365 |
IL2-6/WTpooled | 0.79652 | 0.473 |
IL7-5/WTpooled | 1.07249 | 0.792 |
IL7-3/WTpooled | 1.34034 | 1 |
IL12-4/WTpooled | 1.1639 | 0.52 |
IL1-4/WTpooled | 1.19194 | 1 |
WT/WTpooled | 0.90639 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00667 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90284 | 1 |
DC3000/delta hrp 6h | 0.98832 | 0.95 |
DC3000/delta hrp 12h | 1.10309 | 1 |
DC3000/delta hrp 24h | 0.7696 | 0.246 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.69699 | 0.394 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96323 | 1 |
Exp 36h | 1.15789 | 1 |
Exp 60h | 1.23779 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99686 | 1 |
Var 0h | 1.07274 | 0.936 |
Var 12h I row2-row1 | 1.18534 | 0.544 |
Var 12h NI row2-row1 | 1.13826 | 0.34 |
Var 36h I row2-row1 | 1.32079 | 0.339 |
Var 36h NI row2-row1 | 0.81918 | 0.61 |
Var 60h I row2-row1 | 0.96764 | 0.952 |
Var 60h NI row2-row1 | 0.69846 | 0.866 |
Time course 0hI-0hNI | 1.00097 | 1 |
Time course 12hI-12hNI | 0.91835 | 0.424 |
Time course 36hI-36hNI | 1.24184 | 0.355 |
Time course 60hI-60hNI | 1.61832 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.47322 | 0.287 |
transgenic ySAMdc/azygous control (breaker) | 1.19849 | 1 |
transgenic ySAMdc/azygous control (red) | 1.3449 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95944 | 0.323 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04515 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0048 | 1 |
Manapal/WT (break) | 0.71583 | 0.333 |
Manapal/WT (red) | 1.28459 | 0.413 |
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