Expression of 1-1-6.3.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.851660.456
27DAP/17DAP1.262520.809
39DAP/27DAP3.23790.057
41DAP/39DAP0.99470.772
42DAP/41DAP1.519610.066
43DAP/42DAP0.946990.877
47DAP/43DAP0.829210.492
52DAP/47DAP0.907050.702
57DAP/52DAP1.435240.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.854050.094
17DAP/reference1.024260.717
27DAP/reference1.021230.831
39DAP/reference1.081020.262
41DAP/reference0.847890.085
42DAP/reference1.248060.003
43DAP/reference1.00641
47DAP/reference1.337690.011
52DAP/reference1.064320.991
57DAP/reference1.159480.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.106980.975
27DAP/17DAP1.201240.822
39DAP/27DAP3.212230.039
41DAP/39DAP2.589290.008
42DAP/41DAP0.821880.143
43DAP/42DAP0.69980.024
47DAP/43DAP1.808430.012
52DAP/47DAP0.79770.226
57DAP/52DAP1.041760.926
57DAP/7DAP1.63805

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.746670.091
17DAP/reference0.801890.108
27DAP/reference1.050120.804
39DAP/reference1.089591
41DAP/reference0.786630.146
42DAP/reference0.938020.355
43DAP/reference1.073621
47DAP/reference1.31270.102
52DAP/reference1.610320.008
57DAP/reference1.885520.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.905780.19
17DAP/reference1.016790.873
27DAP/reference1.098610.607
39DAP/reference1.120310.272
41DAP/reference1.12990.285
42DAP/reference1.203430.034
43DAP/reference1.174090.424
47DAP/reference1.056140.377
52DAP/reference1.024541
57DAP/reference1.122630.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.945340.362
17DAP/reference1.033720.638
27DAP/reference1.013660.805
39DAP/reference0.905150.163
41DAP/reference0.892580.209
42DAP/reference0.977860.671
43DAP/reference0.970830.568
47DAP/reference1.323260.012
52DAP/reference1.569040.247
57DAP/reference1.210410.56

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.904561
26DAP/20DAP0.69680.317
34DAP/26DAP1.796971
51DAP/34DAP1.457570.429
52DAP/51DAP0.90830.151
53DAP/52DAP0.966310.876
55DAP/53DAP1.069190.842
57DAP/55DAP0.948950.825
62DAP/57DAP1.092591
68DAP/62DAP1.261780.962
68DAP/14DAP1.433510.025

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.670140.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.583050.141
Mature Green Tomato/Ripe Tomato0.766230.377
Immature Eggplant/Mature Eggplant1.829490.05
Ripe Pepper/Ripe Tomato0.354750.224
Mature Eggplant/Ripe Tomato0.091980.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.36880.536
1-1-2/M821.364321
12-2/M821.392791
12-4/M820.598660.257
1-3/M820.615480.378
2-1-1/M820.737510.784
2-1/M821.118341
2-6/M820.294060.501
3-2/M820.326640.402
4-1-1/M820.376640.926
4-1/M820.674510.737
4-3-2/M820.299010.412
4-3/M820.212090.466
5-3/M821.17410.572
6-2/M820.312560.473
6-3/M821.200821
7-1/M821.033381
7-2/M820.538990.527
9-3-2/M820.446530.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled2.487520.277
IL2-6/WTpooled0.953431
IL7-5/WTpooled1.128880.792
IL7-3/WTpooled3.790221
IL12-4/WTpooled1.57350.516
IL1-4/WTpooled3.398420.426
WT/WTpooled0.94230.764

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.578460.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.935391
DC3000/delta hrp 6h0.940440.95
DC3000/delta hrp 12h1.11391
DC3000/delta hrp 24h1.006881

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.32825

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.155341
Exp 36h1.906240.489
Exp 60h1.953250.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995531
Var 0h1.023371
Var 12h I row2-row10.864190.705
Var 12h NI row2-row11.23613
Var 36h I row2-row11.380440.742
Var 36h NI row2-row11.136361
Var 60h I row2-row11.138880.543
Var 60h NI row2-row10.854950.866
Time course 0hI-0hNI1.086010.852
Time course 12hI-12hNI1.045350.811
Time course 36hI-36hNI3.251090.005
Time course 60hI-60hNI4.930380.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.008470.798
transgenic ySAMdc/azygous control (breaker)2.821470.248
transgenic ySAMdc/azygous control (red)1.40851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.239820.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.3480.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.914651
Manapal/WT (break)0.944430.333
Manapal/WT (red)0.962630.503