Expression of 1-1-6.3.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85166 | 0.456 |
27DAP/17DAP | 1.26252 | 0.809 |
39DAP/27DAP | 3.2379 | 0.057 |
41DAP/39DAP | 0.9947 | 0.772 |
42DAP/41DAP | 1.51961 | 0.066 |
43DAP/42DAP | 0.94699 | 0.877 |
47DAP/43DAP | 0.82921 | 0.492 |
52DAP/47DAP | 0.90705 | 0.702 |
57DAP/52DAP | 1.43524 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85405 | 0.094 |
17DAP/reference | 1.02426 | 0.717 |
27DAP/reference | 1.02123 | 0.831 |
39DAP/reference | 1.08102 | 0.262 |
41DAP/reference | 0.84789 | 0.085 |
42DAP/reference | 1.24806 | 0.003 |
43DAP/reference | 1.0064 | 1 |
47DAP/reference | 1.33769 | 0.011 |
52DAP/reference | 1.06432 | 0.991 |
57DAP/reference | 1.15948 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10698 | 0.975 |
27DAP/17DAP | 1.20124 | 0.822 |
39DAP/27DAP | 3.21223 | 0.039 |
41DAP/39DAP | 2.58929 | 0.008 |
42DAP/41DAP | 0.82188 | 0.143 |
43DAP/42DAP | 0.6998 | 0.024 |
47DAP/43DAP | 1.80843 | 0.012 |
52DAP/47DAP | 0.7977 | 0.226 |
57DAP/52DAP | 1.04176 | 0.926 |
57DAP/7DAP | 1.63805 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74667 | 0.091 |
17DAP/reference | 0.80189 | 0.108 |
27DAP/reference | 1.05012 | 0.804 |
39DAP/reference | 1.08959 | 1 |
41DAP/reference | 0.78663 | 0.146 |
42DAP/reference | 0.93802 | 0.355 |
43DAP/reference | 1.07362 | 1 |
47DAP/reference | 1.3127 | 0.102 |
52DAP/reference | 1.61032 | 0.008 |
57DAP/reference | 1.88552 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90578 | 0.19 |
17DAP/reference | 1.01679 | 0.873 |
27DAP/reference | 1.09861 | 0.607 |
39DAP/reference | 1.12031 | 0.272 |
41DAP/reference | 1.1299 | 0.285 |
42DAP/reference | 1.20343 | 0.034 |
43DAP/reference | 1.17409 | 0.424 |
47DAP/reference | 1.05614 | 0.377 |
52DAP/reference | 1.02454 | 1 |
57DAP/reference | 1.12263 | 0.398 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94534 | 0.362 |
17DAP/reference | 1.03372 | 0.638 |
27DAP/reference | 1.01366 | 0.805 |
39DAP/reference | 0.90515 | 0.163 |
41DAP/reference | 0.89258 | 0.209 |
42DAP/reference | 0.97786 | 0.671 |
43DAP/reference | 0.97083 | 0.568 |
47DAP/reference | 1.32326 | 0.012 |
52DAP/reference | 1.56904 | 0.247 |
57DAP/reference | 1.21041 | 0.56 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90456 | 1 |
26DAP/20DAP | 0.6968 | 0.317 |
34DAP/26DAP | 1.79697 | 1 |
51DAP/34DAP | 1.45757 | 0.429 |
52DAP/51DAP | 0.9083 | 0.151 |
53DAP/52DAP | 0.96631 | 0.876 |
55DAP/53DAP | 1.06919 | 0.842 |
57DAP/55DAP | 0.94895 | 0.825 |
62DAP/57DAP | 1.09259 | 1 |
68DAP/62DAP | 1.26178 | 0.962 |
68DAP/14DAP | 1.43351 | 0.025 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.67014 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.58305 | 0.141 |
Mature Green Tomato/Ripe Tomato | 0.76623 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.82949 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.35475 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.09198 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.3688 | 0.536 |
1-1-2/M82 | 1.36432 | 1 |
12-2/M82 | 1.39279 | 1 |
12-4/M82 | 0.59866 | 0.257 |
1-3/M82 | 0.61548 | 0.378 |
2-1-1/M82 | 0.73751 | 0.784 |
2-1/M82 | 1.11834 | 1 |
2-6/M82 | 0.29406 | 0.501 |
3-2/M82 | 0.32664 | 0.402 |
4-1-1/M82 | 0.37664 | 0.926 |
4-1/M82 | 0.67451 | 0.737 |
4-3-2/M82 | 0.29901 | 0.412 |
4-3/M82 | 0.21209 | 0.466 |
5-3/M82 | 1.1741 | 0.572 |
6-2/M82 | 0.31256 | 0.473 |
6-3/M82 | 1.20082 | 1 |
7-1/M82 | 1.03338 | 1 |
7-2/M82 | 0.53899 | 0.527 |
9-3-2/M82 | 0.44653 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 2.48752 | 0.277 |
IL2-6/WTpooled | 0.95343 | 1 |
IL7-5/WTpooled | 1.12888 | 0.792 |
IL7-3/WTpooled | 3.79022 | 1 |
IL12-4/WTpooled | 1.5735 | 0.516 |
IL1-4/WTpooled | 3.39842 | 0.426 |
WT/WTpooled | 0.9423 | 0.764 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.57846 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93539 | 1 |
DC3000/delta hrp 6h | 0.94044 | 0.95 |
DC3000/delta hrp 12h | 1.1139 | 1 |
DC3000/delta hrp 24h | 1.00688 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.32825 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15534 | 1 |
Exp 36h | 1.90624 | 0.489 |
Exp 60h | 1.95325 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99553 | 1 |
Var 0h | 1.02337 | 1 |
Var 12h I row2-row1 | 0.86419 | 0.705 |
Var 12h NI row2-row1 | 1.23613 | |
Var 36h I row2-row1 | 1.38044 | 0.742 |
Var 36h NI row2-row1 | 1.13636 | 1 |
Var 60h I row2-row1 | 1.13888 | 0.543 |
Var 60h NI row2-row1 | 0.85495 | 0.866 |
Time course 0hI-0hNI | 1.08601 | 0.852 |
Time course 12hI-12hNI | 1.04535 | 0.811 |
Time course 36hI-36hNI | 3.25109 | 0.005 |
Time course 60hI-60hNI | 4.93038 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00847 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 2.82147 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.4085 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.23982 | 0.061 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.348 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91465 | 1 |
Manapal/WT (break) | 0.94443 | 0.333 |
Manapal/WT (red) | 0.96263 | 0.503 |
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