Expression of 1-1-6.3.2.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10033 | 0.878 |
27DAP/17DAP | 0.83476 | 0.561 |
39DAP/27DAP | 1.28821 | 0.476 |
41DAP/39DAP | 0.67086 | 0.092 |
42DAP/41DAP | 1.21777 | 0.974 |
43DAP/42DAP | 1.11026 | 0.974 |
47DAP/43DAP | 0.90132 | 0.663 |
52DAP/47DAP | 0.93226 | 0.779 |
57DAP/52DAP | 1.17146 | 0.737 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10206 | 0.29 |
17DAP/reference | 0.92281 | 0.342 |
27DAP/reference | 0.94876 | 0.406 |
39DAP/reference | 0.94159 | 0.467 |
41DAP/reference | 0.90388 | 0.201 |
42DAP/reference | 1.06538 | 0.869 |
43DAP/reference | 1.12371 | 0.142 |
47DAP/reference | 1.10322 | 0.042 |
52DAP/reference | 0.83655 | 0.077 |
57DAP/reference | 1.01002 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18982 | 0.179 |
27DAP/17DAP | 1.08837 | 0.905 |
39DAP/27DAP | 0.91437 | 0.462 |
41DAP/39DAP | 1.37429 | 0.69 |
42DAP/41DAP | 1.04983 | 0.893 |
43DAP/42DAP | 0.75492 | 0.027 |
47DAP/43DAP | 0.97379 | 0.877 |
52DAP/47DAP | 0.90258 | 0.46 |
57DAP/52DAP | 1.00636 | 0.921 |
57DAP/7DAP | 0.91417 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.70651 | 0.024 |
17DAP/reference | 1.54586 | 0.008 |
27DAP/reference | 1.56995 | 0.007 |
39DAP/reference | 1.46784 | 0.008 |
41DAP/reference | 1.35566 | 0.018 |
42DAP/reference | 1.29474 | 0.01 |
43DAP/reference | 1.04784 | 0.83 |
47DAP/reference | 1.43318 | 0.018 |
52DAP/reference | 1.67815 | 0.007 |
57DAP/reference | 1.45654 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0449 | 0.894 |
17DAP/reference | 1.19797 | 0.278 |
27DAP/reference | 1.50403 | 0.073 |
39DAP/reference | 1.47926 | 0.013 |
41DAP/reference | 1.33378 | 0.012 |
42DAP/reference | 1.24932 | 0.04 |
43DAP/reference | 0.90222 | 0.307 |
47DAP/reference | 1.55003 | 0.008 |
52DAP/reference | 0.96102 | 0.38 |
57DAP/reference | 1.09947 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54155 | 0.016 |
17DAP/reference | 1.13835 | 0.333 |
27DAP/reference | 1.11859 | 0.125 |
39DAP/reference | 1.3922 | 0.011 |
41DAP/reference | 1.14064 | 0.471 |
42DAP/reference | 1.2646 | 0.134 |
43DAP/reference | 1.57142 | 0.023 |
47DAP/reference | 1.12058 | 0.461 |
52DAP/reference | 1.76727 | 0.035 |
57DAP/reference | 1.62865 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04558 | 0.966 |
26DAP/20DAP | 1.74901 | 0.265 |
34DAP/26DAP | 0.80155 | 0.112 |
51DAP/34DAP | 0.91995 | 0.618 |
52DAP/51DAP | 0.81044 | 1 |
53DAP/52DAP | 0.96259 | 0.848 |
55DAP/53DAP | 0.50374 | 0.02 |
57DAP/55DAP | 1.17246 | 0.805 |
62DAP/57DAP | 0.69652 | 0.088 |
68DAP/62DAP | 1.17435 | 0.626 |
68DAP/14DAP | 1.83797 | 0.161 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.6658 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.10603 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.32815 | 0.106 |
Immature Eggplant/Mature Eggplant | 1.42088 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.10133 | 1 |
Mature Eggplant/Ripe Tomato | 0.95094 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91152 | 0.907 |
1-1-2/M82 | 1.22354 | 1 |
12-2/M82 | 0.91912 | 0.955 |
12-4/M82 | 1.10869 | 1 |
1-3/M82 | 2.39263 | 0.277 |
2-1-1/M82 | 0.86977 | 0.784 |
2-1/M82 | 0.9117 | 0.74 |
2-6/M82 | 0.75704 | 0.501 |
3-2/M82 | 1.20561 | 0.717 |
4-1-1/M82 | 1.09112 | 0.968 |
4-1/M82 | 0.80606 | |
4-3-2/M82 | 1.34439 | 0.284 |
4-3/M82 | 1.19535 | 1 |
5-3/M82 | 1.33588 | 0.496 |
6-2/M82 | 1.10424 | 1 |
6-3/M82 | 1.32477 | 1 |
7-1/M82 | 0.8968 | 0.803 |
7-2/M82 | 1.21771 | 0.324 |
9-3-2/M82 | 1.28261 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.3002 | |
IL2-6/WTpooled | 1.05561 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.86778 | 0.418 |
IL12-4/WTpooled | 0.8462 | 0.543 |
IL1-4/WTpooled | 0.92462 | 1 |
WT/WTpooled | 0.93794 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06966 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09845 | 0.75 |
DC3000/delta hrp 6h | 1.12414 | 1 |
DC3000/delta hrp 12h | 0.96805 | 1 |
DC3000/delta hrp 24h | 1.26978 | 0.069 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.02754 | |
DC3000 delta B/DC3000 delta AB | 1.23742 | 0.261 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8938 | 1 |
Exp 36h | 1.34614 | 0.693 |
Exp 60h | 1.32572 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00144 | 1 |
Var 0h | 0.88077 | 0.594 |
Var 12h I row2-row1 | 1.00378 | 1 |
Var 12h NI row2-row1 | 1.32525 | 0.649 |
Var 36h I row2-row1 | 1.28732 | 0.298 |
Var 36h NI row2-row1 | 0.77792 | 0.478 |
Var 60h I row2-row1 | 0.7454 | 0.582 |
Var 60h NI row2-row1 | 0.76432 | 0.38 |
Time course 0hI-0hNI | 0.82648 | 0.095 |
Time course 12hI-12hNI | 1.07199 | 0.572 |
Time course 36hI-36hNI | 1.54386 | 0.035 |
Time course 60hI-60hNI | 1.64409 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93193 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.33521 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.25937 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12892 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92418 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83621 | 0.172 |
Manapal/WT (break) | 1.11816 | 1 |
Manapal/WT (red) | 1.11388 | 1 |
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