Expression of 1-1-6.3.2.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.105770.77
27DAP/17DAP1.232130.883
39DAP/27DAP0.897910.62
41DAP/39DAP0.836750.407
42DAP/41DAP0.918491
43DAP/42DAP1.209570.906
47DAP/43DAP1.046690.934
52DAP/47DAP1.110410.906
57DAP/52DAP1.011010.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.52730.016
17DAP/reference1.056060.318
27DAP/reference0.975080.623
39DAP/reference1.034070.76
41DAP/reference0.812980.085
42DAP/reference1.318380.125
43DAP/reference1.081150.596
47DAP/reference1.158190.175
52DAP/reference1.476530.035
57DAP/reference1.218260.041

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.199190.271
27DAP/17DAP0.783560.131
39DAP/27DAP1.146990.581
41DAP/39DAP0.941530.885
42DAP/41DAP1.084620.727
43DAP/42DAP1.024470.788
47DAP/43DAP0.921190.31
52DAP/47DAP0.977970.902
57DAP/52DAP1.129530.442
57DAP/7DAP0.99911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.128020.36
17DAP/reference1.224560.199
27DAP/reference0.939430.348
39DAP/reference1.241330.333
41DAP/reference1.033310.891
42DAP/reference1.191540.059
43DAP/reference1.131680.241
47DAP/reference1.071220.595
52DAP/reference1.329530.086
57DAP/reference1.13180.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.536680.062
17DAP/reference1.703140.107
27DAP/reference1.473680.089
39DAP/reference1.360810.014
41DAP/reference1.305130.166
42DAP/reference1.560040.015
43DAP/reference1.630.188
47DAP/reference1.359320.009
52DAP/reference1.446070.01
57DAP/reference1.314820.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.898680.362
17DAP/reference1.362530.326
27DAP/reference1.107730.34
39DAP/reference1.318940.059
41DAP/reference1.334070.521
42DAP/reference2.63869
43DAP/reference1.583840.013
47DAP/reference1.138570.055
52DAP/reference1.141350.499
57DAP/reference1.570980.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.667160.006
26DAP/20DAP0.791751
34DAP/26DAP1.51820.819
51DAP/34DAP0.773160.268
52DAP/51DAP1.882440.034
53DAP/52DAP0.86950.371
55DAP/53DAP1.158390.312
57DAP/55DAP1.050730.899
62DAP/57DAP1.247630.569
68DAP/62DAP0.715590.505
68DAP/14DAP0.847081

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.7930.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.69520.187
Mature Green Tomato/Ripe Tomato0.766110.132
Immature Eggplant/Mature Eggplant1.05580.554
Ripe Pepper/Ripe Tomato1.530780.256
Mature Eggplant/Ripe Tomato1.231811

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.74325
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.87285
1-3/M82N/AN/A
2-1-1/M820.99294
2-1/M821.13626
2-6/M821.74451
3-2/M821.01382
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.14637
4-3/M820.894940.611
5-3/M820.9181
6-2/M821.0181
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.19876
9-3-2/M821.2044

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.205220.365
IL2-6/WTpooled1.464670.419
IL7-5/WTpooled0.859741
IL7-3/WTpooled1.200181
IL12-4/WTpooled1.442610.538
IL1-4/WTpooled1.1681
WT/WTpooled0.990571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.185571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985561
DC3000/delta hrp 6h0.928480.95
DC3000/delta hrp 12h0.951621
DC3000/delta hrp 24h0.935280.503

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.015091
DC3000 delta B/DC3000 delta AB0.927120.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.788991
Exp 36h1.184851
Exp 60h1.173650.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995521
Var 0h0.787750.457
Var 12h I row2-row11.026241
Var 12h NI row2-row11.48760.235
Var 36h I row2-row11.178571
Var 36h NI row2-row10.845460.522
Var 60h I row2-row10.763040.832
Var 60h NI row2-row10.771140.408
Time course 0hI-0hNI1.178560.227
Time course 12hI-12hNI1.03590.867
Time course 36hI-36hNI1.600880.005
Time course 60hI-60hNI2.166120.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.157140.326
transgenic ySAMdc/azygous control (breaker)1.00741
transgenic ySAMdc/azygous control (red)1.158890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980850.383

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.757270.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.982051
Manapal/WT (break)1.226740.381
Manapal/WT (red)1.27270.413