Expression of 1-1-6.3.2.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10577 | 0.77 |
27DAP/17DAP | 1.23213 | 0.883 |
39DAP/27DAP | 0.89791 | 0.62 |
41DAP/39DAP | 0.83675 | 0.407 |
42DAP/41DAP | 0.91849 | 1 |
43DAP/42DAP | 1.20957 | 0.906 |
47DAP/43DAP | 1.04669 | 0.934 |
52DAP/47DAP | 1.11041 | 0.906 |
57DAP/52DAP | 1.01101 | 0.982 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.5273 | 0.016 |
17DAP/reference | 1.05606 | 0.318 |
27DAP/reference | 0.97508 | 0.623 |
39DAP/reference | 1.03407 | 0.76 |
41DAP/reference | 0.81298 | 0.085 |
42DAP/reference | 1.31838 | 0.125 |
43DAP/reference | 1.08115 | 0.596 |
47DAP/reference | 1.15819 | 0.175 |
52DAP/reference | 1.47653 | 0.035 |
57DAP/reference | 1.21826 | 0.041 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19919 | 0.271 |
27DAP/17DAP | 0.78356 | 0.131 |
39DAP/27DAP | 1.14699 | 0.581 |
41DAP/39DAP | 0.94153 | 0.885 |
42DAP/41DAP | 1.08462 | 0.727 |
43DAP/42DAP | 1.02447 | 0.788 |
47DAP/43DAP | 0.92119 | 0.31 |
52DAP/47DAP | 0.97797 | 0.902 |
57DAP/52DAP | 1.12953 | 0.442 |
57DAP/7DAP | 0.9991 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12802 | 0.36 |
17DAP/reference | 1.22456 | 0.199 |
27DAP/reference | 0.93943 | 0.348 |
39DAP/reference | 1.24133 | 0.333 |
41DAP/reference | 1.03331 | 0.891 |
42DAP/reference | 1.19154 | 0.059 |
43DAP/reference | 1.13168 | 0.241 |
47DAP/reference | 1.07122 | 0.595 |
52DAP/reference | 1.32953 | 0.086 |
57DAP/reference | 1.1318 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53668 | 0.062 |
17DAP/reference | 1.70314 | 0.107 |
27DAP/reference | 1.47368 | 0.089 |
39DAP/reference | 1.36081 | 0.014 |
41DAP/reference | 1.30513 | 0.166 |
42DAP/reference | 1.56004 | 0.015 |
43DAP/reference | 1.63 | 0.188 |
47DAP/reference | 1.35932 | 0.009 |
52DAP/reference | 1.44607 | 0.01 |
57DAP/reference | 1.31482 | 0.017 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89868 | 0.362 |
17DAP/reference | 1.36253 | 0.326 |
27DAP/reference | 1.10773 | 0.34 |
39DAP/reference | 1.31894 | 0.059 |
41DAP/reference | 1.33407 | 0.521 |
42DAP/reference | 2.63869 | |
43DAP/reference | 1.58384 | 0.013 |
47DAP/reference | 1.13857 | 0.055 |
52DAP/reference | 1.14135 | 0.499 |
57DAP/reference | 1.57098 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.66716 | 0.006 |
26DAP/20DAP | 0.79175 | 1 |
34DAP/26DAP | 1.5182 | 0.819 |
51DAP/34DAP | 0.77316 | 0.268 |
52DAP/51DAP | 1.88244 | 0.034 |
53DAP/52DAP | 0.8695 | 0.371 |
55DAP/53DAP | 1.15839 | 0.312 |
57DAP/55DAP | 1.05073 | 0.899 |
62DAP/57DAP | 1.24763 | 0.569 |
68DAP/62DAP | 0.71559 | 0.505 |
68DAP/14DAP | 0.84708 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.793 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.6952 | 0.187 |
Mature Green Tomato/Ripe Tomato | 0.76611 | 0.132 |
Immature Eggplant/Mature Eggplant | 1.0558 | 0.554 |
Ripe Pepper/Ripe Tomato | 1.53078 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.23181 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.74325 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.87285 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.99294 | |
2-1/M82 | 1.13626 | |
2-6/M82 | 1.74451 | |
3-2/M82 | 1.01382 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.14637 | |
4-3/M82 | 0.89494 | 0.611 |
5-3/M82 | 0.918 | 1 |
6-2/M82 | 1.0181 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.19876 | |
9-3-2/M82 | 1.2044 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.20522 | 0.365 |
IL2-6/WTpooled | 1.46467 | 0.419 |
IL7-5/WTpooled | 0.85974 | 1 |
IL7-3/WTpooled | 1.20018 | 1 |
IL12-4/WTpooled | 1.44261 | 0.538 |
IL1-4/WTpooled | 1.168 | 1 |
WT/WTpooled | 0.99057 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18557 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98556 | 1 |
DC3000/delta hrp 6h | 0.92848 | 0.95 |
DC3000/delta hrp 12h | 0.95162 | 1 |
DC3000/delta hrp 24h | 0.93528 | 0.503 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.01509 | 1 |
DC3000 delta B/DC3000 delta AB | 0.92712 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78899 | 1 |
Exp 36h | 1.18485 | 1 |
Exp 60h | 1.17365 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99552 | 1 |
Var 0h | 0.78775 | 0.457 |
Var 12h I row2-row1 | 1.02624 | 1 |
Var 12h NI row2-row1 | 1.4876 | 0.235 |
Var 36h I row2-row1 | 1.17857 | 1 |
Var 36h NI row2-row1 | 0.84546 | 0.522 |
Var 60h I row2-row1 | 0.76304 | 0.832 |
Var 60h NI row2-row1 | 0.77114 | 0.408 |
Time course 0hI-0hNI | 1.17856 | 0.227 |
Time course 12hI-12hNI | 1.0359 | 0.867 |
Time course 36hI-36hNI | 1.60088 | 0.005 |
Time course 60hI-60hNI | 2.16612 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.15714 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 1.0074 | 1 |
transgenic ySAMdc/azygous control (red) | 1.15889 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98085 | 0.383 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75727 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98205 | 1 |
Manapal/WT (break) | 1.22674 | 0.381 |
Manapal/WT (red) | 1.2727 | 0.413 |
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