Expression of 1-1-6.3.2.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.730040.11
27DAP/17DAP0.853120.686
39DAP/27DAP0.90980.573
41DAP/39DAP1.195550.168
42DAP/41DAP1.087710.941
43DAP/42DAP1.099611
47DAP/43DAP1.186740.809
52DAP/47DAP0.98380.886
57DAP/52DAP1.206140.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.927320.317
17DAP/reference1.073460.185
27DAP/reference1.011650.831
39DAP/reference0.994310.921
41DAP/reference1.034790.48
42DAP/reference0.875220.095
43DAP/reference1.073850.471
47DAP/reference0.904170.148
52DAP/reference1.058650.8
57DAP/reference1.067690.6

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.981570.763
27DAP/17DAP0.792220.172
39DAP/27DAP0.797570.529
41DAP/39DAP1.135490.868
42DAP/41DAP1.093281
43DAP/42DAP1.03981
47DAP/43DAP1.089350.941
52DAP/47DAP1.435130.286
57DAP/52DAP0.907260.566
57DAP/7DAP1.176191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043220.98
17DAP/reference1.117160.199
27DAP/reference0.992530.614
39DAP/reference1.050141
41DAP/reference1.220720.303
42DAP/reference1.172960.889
43DAP/reference1.18320.289
47DAP/reference0.896340.383
52DAP/reference1.051790.781
57DAP/reference0.978960.458

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.878970.115
17DAP/reference0.739260.005
27DAP/reference0.820770.031
39DAP/reference0.958380.339
41DAP/reference0.962380.348
42DAP/reference0.861390.022
43DAP/reference0.947780.423
47DAP/reference0.9450.178
52DAP/reference0.931260.171
57DAP/reference0.80410.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052660.75
17DAP/reference1.021141
27DAP/reference1.296960.025
39DAP/reference1.00940.889
41DAP/reference1.119640.657
42DAP/reference0.762120.108
43DAP/reference0.949270.468
47DAP/reference0.983940.558
52DAP/reference1.036730.705
57DAP/reference1.230440.531

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.134610.945
26DAP/20DAP1.66832
34DAP/26DAP2.486411
51DAP/34DAPN/AN/A
52DAP/51DAP0.40607
53DAP/52DAP0.61466
55DAP/53DAP0.603710.125
57DAP/55DAP0.590370.19
62DAP/57DAP1.198630.868
68DAP/62DAP1.62710.31
68DAP/14DAP1.362160.108

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.188130.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.27113

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.903150.944
1-1-2/M821.28237
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.960161
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.853120.642
6-2/M82N/AN/A
6-3/M821.11203
7-1/M82N/AN/A
7-2/M821.138321
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.741310.247
IL2-6/WTpooled1.049860.584
IL7-5/WTpooled0.787041
IL7-3/WTpooled0.955451
IL12-4/WTpooled1.019591
IL1-4/WTpooled0.833760.562
WT/WTpooled0.976111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.403980.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083320.875
DC3000/delta hrp 6h1.404410.672
DC3000/delta hrp 12h1.026261
DC3000/delta hrp 24h1.062190.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.969671
Exp 36hN/AN/A
Exp 60h1.168260.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.971591
Var 0h0.97811
Var 12h I row2-row10.97302
Var 12h NI row2-row10.87898
Var 36h I row2-row11.620520.601
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row11.01055
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.900660.485
Time course 12hI-12hNI1.066811
Time course 36hI-36hNI1.701040.005
Time course 60hI-60hNI1.867740.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.027890.541
transgenic ySAMdc/azygous control (breaker)2.263430.161
transgenic ySAMdc/azygous control (red)1.288940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986340.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.872470.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.968811
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.098240.164