Expression of 1-1-6.3.2.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73004 | 0.11 |
27DAP/17DAP | 0.85312 | 0.686 |
39DAP/27DAP | 0.9098 | 0.573 |
41DAP/39DAP | 1.19555 | 0.168 |
42DAP/41DAP | 1.08771 | 0.941 |
43DAP/42DAP | 1.09961 | 1 |
47DAP/43DAP | 1.18674 | 0.809 |
52DAP/47DAP | 0.9838 | 0.886 |
57DAP/52DAP | 1.20614 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92732 | 0.317 |
17DAP/reference | 1.07346 | 0.185 |
27DAP/reference | 1.01165 | 0.831 |
39DAP/reference | 0.99431 | 0.921 |
41DAP/reference | 1.03479 | 0.48 |
42DAP/reference | 0.87522 | 0.095 |
43DAP/reference | 1.07385 | 0.471 |
47DAP/reference | 0.90417 | 0.148 |
52DAP/reference | 1.05865 | 0.8 |
57DAP/reference | 1.06769 | 0.6 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98157 | 0.763 |
27DAP/17DAP | 0.79222 | 0.172 |
39DAP/27DAP | 0.79757 | 0.529 |
41DAP/39DAP | 1.13549 | 0.868 |
42DAP/41DAP | 1.09328 | 1 |
43DAP/42DAP | 1.0398 | 1 |
47DAP/43DAP | 1.08935 | 0.941 |
52DAP/47DAP | 1.43513 | 0.286 |
57DAP/52DAP | 0.90726 | 0.566 |
57DAP/7DAP | 1.17619 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04322 | 0.98 |
17DAP/reference | 1.11716 | 0.199 |
27DAP/reference | 0.99253 | 0.614 |
39DAP/reference | 1.05014 | 1 |
41DAP/reference | 1.22072 | 0.303 |
42DAP/reference | 1.17296 | 0.889 |
43DAP/reference | 1.1832 | 0.289 |
47DAP/reference | 0.89634 | 0.383 |
52DAP/reference | 1.05179 | 0.781 |
57DAP/reference | 0.97896 | 0.458 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87897 | 0.115 |
17DAP/reference | 0.73926 | 0.005 |
27DAP/reference | 0.82077 | 0.031 |
39DAP/reference | 0.95838 | 0.339 |
41DAP/reference | 0.96238 | 0.348 |
42DAP/reference | 0.86139 | 0.022 |
43DAP/reference | 0.94778 | 0.423 |
47DAP/reference | 0.945 | 0.178 |
52DAP/reference | 0.93126 | 0.171 |
57DAP/reference | 0.8041 | 0.024 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05266 | 0.75 |
17DAP/reference | 1.02114 | 1 |
27DAP/reference | 1.29696 | 0.025 |
39DAP/reference | 1.0094 | 0.889 |
41DAP/reference | 1.11964 | 0.657 |
42DAP/reference | 0.76212 | 0.108 |
43DAP/reference | 0.94927 | 0.468 |
47DAP/reference | 0.98394 | 0.558 |
52DAP/reference | 1.03673 | 0.705 |
57DAP/reference | 1.23044 | 0.531 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13461 | 0.945 |
26DAP/20DAP | 1.66832 | |
34DAP/26DAP | 2.48641 | 1 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 0.40607 | |
53DAP/52DAP | 0.61466 | |
55DAP/53DAP | 0.60371 | 0.125 |
57DAP/55DAP | 0.59037 | 0.19 |
62DAP/57DAP | 1.19863 | 0.868 |
68DAP/62DAP | 1.6271 | 0.31 |
68DAP/14DAP | 1.36216 | 0.108 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18813 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.27113 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90315 | 0.944 |
1-1-2/M82 | 1.28237 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96016 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.85312 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.11203 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.13832 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.74131 | 0.247 |
IL2-6/WTpooled | 1.04986 | 0.584 |
IL7-5/WTpooled | 0.78704 | 1 |
IL7-3/WTpooled | 0.95545 | 1 |
IL12-4/WTpooled | 1.01959 | 1 |
IL1-4/WTpooled | 0.83376 | 0.562 |
WT/WTpooled | 0.97611 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.40398 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08332 | 0.875 |
DC3000/delta hrp 6h | 1.40441 | 0.672 |
DC3000/delta hrp 12h | 1.02626 | 1 |
DC3000/delta hrp 24h | 1.06219 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96967 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.16826 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97159 | 1 |
Var 0h | 0.97811 | |
Var 12h I row2-row1 | 0.97302 | |
Var 12h NI row2-row1 | 0.87898 | |
Var 36h I row2-row1 | 1.62052 | 0.601 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 1.01055 | |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.90066 | 0.485 |
Time course 12hI-12hNI | 1.06681 | 1 |
Time course 36hI-36hNI | 1.70104 | 0.005 |
Time course 60hI-60hNI | 1.86774 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02789 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 2.26343 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.28894 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98634 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87247 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96881 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.09824 | 0.164 |
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