Expression of 1-1-6.3.20.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88816 | 0.532 |
27DAP/17DAP | 1.55145 | 0.552 |
39DAP/27DAP | 1.36915 | 0.675 |
41DAP/39DAP | 1.25076 | 0.372 |
42DAP/41DAP | 1.43335 | 0.844 |
43DAP/42DAP | 0.93202 | 0.867 |
47DAP/43DAP | 0.86592 | 0.599 |
52DAP/47DAP | 2.83423 | 0.538 |
57DAP/52DAP | 0.88402 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.91048 | |
27DAP/reference | 0.93551 | |
39DAP/reference | 1.82303 | 0.013 |
41DAP/reference | N/A | N/A |
42DAP/reference | 0.66776 | 0.001 |
43DAP/reference | 1.46737 | |
47DAP/reference | 0.8183 | 0.042 |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.73718 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39661 | 0.99 |
27DAP/17DAP | 1.35269 | 0.912 |
39DAP/27DAP | 1.13553 | 0.964 |
41DAP/39DAP | 1.72456 | 0.55 |
42DAP/41DAP | 0.96899 | 0.797 |
43DAP/42DAP | 1.2215 | 0.746 |
47DAP/43DAP | 1.00996 | 0.902 |
52DAP/47DAP | 1.24065 | 0.635 |
57DAP/52DAP | 1.10949 | 0.862 |
57DAP/7DAP | 0.86828 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14563 | 0.223 |
17DAP/reference | 0.96216 | 0.518 |
27DAP/reference | 0.91708 | 0.215 |
39DAP/reference | 0.60533 | 0.013 |
41DAP/reference | 0.64429 | 0.023 |
42DAP/reference | 0.7036 | 0.019 |
43DAP/reference | 0.90874 | 0.183 |
47DAP/reference | 0.94317 | 0.504 |
52DAP/reference | 0.81912 | 0.126 |
57DAP/reference | 0.8678 | 0.109 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.68755 | 0.011 |
17DAP/reference | 0.86146 | 0.113 |
27DAP/reference | 0.87286 | 0.104 |
39DAP/reference | 0.76737 | 0.083 |
41DAP/reference | 1.21703 | 0.766 |
42DAP/reference | 0.82768 | 0.108 |
43DAP/reference | 0.65033 | 0.024 |
47DAP/reference | 0.82052 | 0.044 |
52DAP/reference | 0.89816 | 0.143 |
57DAP/reference | 0.90152 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94186 | 0.044 |
17DAP/reference | 0.93791 | 0.417 |
27DAP/reference | 1.01867 | 0.672 |
39DAP/reference | 1.02682 | 0.912 |
41DAP/reference | 1.03192 | 0.939 |
42DAP/reference | 0.91404 | 0.172 |
43DAP/reference | 1.09652 | 0.362 |
47DAP/reference | 1.1665 | 0.877 |
52DAP/reference | 1.14111 | 0.443 |
57DAP/reference | 1.42028 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10748 | 1 |
26DAP/20DAP | 0.98728 | 1 |
34DAP/26DAP | 1.03984 | 0.988 |
51DAP/34DAP | 1.52132 | 0.137 |
52DAP/51DAP | 1.29175 | 0.77 |
53DAP/52DAP | 0.76333 | 0.051 |
55DAP/53DAP | 1.16117 | 0.982 |
57DAP/55DAP | 0.74539 | 0.113 |
62DAP/57DAP | 0.9959 | 0.994 |
68DAP/62DAP | 1.63961 | 0.345 |
68DAP/14DAP | 2.61377 | 0.034 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96881 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.56582 | |
Mature Green Tomato/Ripe Tomato | 0.9586 | 0.715 |
Immature Eggplant/Mature Eggplant | 0.44671 | |
Ripe Pepper/Ripe Tomato | 2.22847 | 1 |
Mature Eggplant/Ripe Tomato | 1.62618 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.85107 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.12047 | 1 |
5-3/M82 | 1.018 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.7965 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05846 | 1 |
IL2-6/WTpooled | 0.94315 | 1 |
IL7-5/WTpooled | 1.51363 | |
IL7-3/WTpooled | 0.95544 | 1 |
IL12-4/WTpooled | 1.52049 | 0.531 |
IL1-4/WTpooled | 0.95791 | 1 |
WT/WTpooled | 0.8696 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.33605 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.49344 | 0.846 |
DC3000/delta hrp 6h | 0.92123 | |
DC3000/delta hrp 12h | 0.99697 | 1 |
DC3000/delta hrp 24h | 1.31896 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.37755 | 0.206 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90645 | 1 |
Exp 36h | 2.13605 | 0.693 |
Exp 60h | 1.56468 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.93341 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.17248 | 0.272 |
Var 12h NI row2-row1 | 0.89328 | 0.33 |
Var 36h I row2-row1 | 0.81209 | 0.805 |
Var 36h NI row2-row1 | 0.91783 | 0.791 |
Var 60h I row2-row1 | 0.75117 | 0.285 |
Var 60h NI row2-row1 | 1.32721 | 1 |
Time course 0hI-0hNI | 1.03083 | 1 |
Time course 12hI-12hNI | 4.50083 | 0.164 |
Time course 36hI-36hNI | 3.39485 | 0.004 |
Time course 60hI-60hNI | 5.65381 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81492 | 0.227 |
transgenic ySAMdc/azygous control (breaker) | 0.83669 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.97591 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95997 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09658 | 0.307 |
Manapal/WT (break) | 0.93782 | 0.299 |
Manapal/WT (red) | 0.90414 | 0.424 |
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