Expression of 1-1-6.3.20.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.888160.532
27DAP/17DAP1.551450.552
39DAP/27DAP1.369150.675
41DAP/39DAP1.250760.372
42DAP/41DAP1.433350.844
43DAP/42DAP0.932020.867
47DAP/43DAP0.865920.599
52DAP/47DAP2.834230.538
57DAP/52DAP0.884020.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.91048
27DAP/reference0.93551
39DAP/reference1.823030.013
41DAP/referenceN/AN/A
42DAP/reference0.667760.001
43DAP/reference1.46737
47DAP/reference0.81830.042
52DAP/referenceN/AN/A
57DAP/reference0.73718

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.396610.99
27DAP/17DAP1.352690.912
39DAP/27DAP1.135530.964
41DAP/39DAP1.724560.55
42DAP/41DAP0.968990.797
43DAP/42DAP1.22150.746
47DAP/43DAP1.009960.902
52DAP/47DAP1.240650.635
57DAP/52DAP1.109490.862
57DAP/7DAP0.86828

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.145630.223
17DAP/reference0.962160.518
27DAP/reference0.917080.215
39DAP/reference0.605330.013
41DAP/reference0.644290.023
42DAP/reference0.70360.019
43DAP/reference0.908740.183
47DAP/reference0.943170.504
52DAP/reference0.819120.126
57DAP/reference0.86780.109

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.687550.011
17DAP/reference0.861460.113
27DAP/reference0.872860.104
39DAP/reference0.767370.083
41DAP/reference1.217030.766
42DAP/reference0.827680.108
43DAP/reference0.650330.024
47DAP/reference0.820520.044
52DAP/reference0.898160.143
57DAP/reference0.901520.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.941860.044
17DAP/reference0.937910.417
27DAP/reference1.018670.672
39DAP/reference1.026820.912
41DAP/reference1.031920.939
42DAP/reference0.914040.172
43DAP/reference1.096520.362
47DAP/reference1.16650.877
52DAP/reference1.141110.443
57DAP/reference1.42028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.107481
26DAP/20DAP0.987281
34DAP/26DAP1.039840.988
51DAP/34DAP1.521320.137
52DAP/51DAP1.291750.77
53DAP/52DAP0.763330.051
55DAP/53DAP1.161170.982
57DAP/55DAP0.745390.113
62DAP/57DAP0.99590.994
68DAP/62DAP1.639610.345
68DAP/14DAP2.613770.034

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.968810.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.56582
Mature Green Tomato/Ripe Tomato0.95860.715
Immature Eggplant/Mature Eggplant0.44671
Ripe Pepper/Ripe Tomato2.228471
Mature Eggplant/Ripe Tomato1.62618

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.851070.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.120471
5-3/M821.0181
6-2/M82N/AN/A
6-3/M820.7965
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.058461
IL2-6/WTpooled0.943151
IL7-5/WTpooled1.51363
IL7-3/WTpooled0.955441
IL12-4/WTpooled1.520490.531
IL1-4/WTpooled0.957911
WT/WTpooled0.86961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.336050.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.493440.846
DC3000/delta hrp 6h0.92123
DC3000/delta hrp 12h0.996971
DC3000/delta hrp 24h1.318960.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.377550.206

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.906451
Exp 36h2.136050.693
Exp 60h1.564680.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.933411
Var 0hN/AN/A
Var 12h I row2-row11.172480.272
Var 12h NI row2-row10.893280.33
Var 36h I row2-row10.812090.805
Var 36h NI row2-row10.917830.791
Var 60h I row2-row10.751170.285
Var 60h NI row2-row11.327211
Time course 0hI-0hNI1.030831
Time course 12hI-12hNI4.500830.164
Time course 36hI-36hNI3.394850.004
Time course 60hI-60hNI5.653810.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.814920.227
transgenic ySAMdc/azygous control (breaker)0.836690.173
transgenic ySAMdc/azygous control (red)0.975911

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.959970.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.096580.307
Manapal/WT (break)0.937820.299
Manapal/WT (red)0.904140.424