Expression of 1-1-6.3.20.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.034270.927
27DAP/17DAP1.314330.8
39DAP/27DAP1.154921
41DAP/39DAP1.0170.988
42DAP/41DAP0.756020.774
43DAP/42DAP1.153490.873
47DAP/43DAP0.733490.251
52DAP/47DAP1.275060.718
57DAP/52DAP0.752290.6

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.930360.262
17DAP/reference1.006150.813
27DAP/reference0.98740.741
39DAP/reference0.98490.797
41DAP/reference1.065970.421
42DAP/reference0.894450.01
43DAP/reference1.046010.73
47DAP/reference0.969780.345
52DAP/reference0.933240.25
57DAP/reference0.918980.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.179660.398
27DAP/17DAP0.917820.782
39DAP/27DAP1.147040.636
41DAP/39DAP0.984741
42DAP/41DAP1.03120.927
43DAP/42DAP1.081720.788
47DAP/43DAP1.029250.951
52DAP/47DAP0.951450.834
57DAP/52DAP1.057941
57DAP/7DAP0.963541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081930.613
17DAP/reference0.833980.044
27DAP/reference0.774890.01
39DAP/reference0.843120.109
41DAP/reference0.830110.07
42DAP/reference0.869740.106
43DAP/reference0.754070.016
47DAP/reference1.033050.901
52DAP/reference1.02981
57DAP/reference0.96230.353

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92950.342
17DAP/reference0.880980.124
27DAP/reference0.95690.423
39DAP/reference0.86190.06
41DAP/reference0.861290.085
42DAP/reference0.837380.012
43DAP/reference0.875730.17
47DAP/reference0.92880.154
52DAP/reference0.861080.015
57DAP/reference0.891930.125

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.911590.104
17DAP/reference0.850040.205
27DAP/reference0.741790.031
39DAP/reference0.855950.046
41DAP/reference0.915620.167
42DAP/reference0.990510.816
43DAP/reference0.881070.281
47DAP/reference0.964070.357
52DAP/reference0.943240.538
57DAP/reference0.877050.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.159080.966
26DAP/20DAP1.526930.196
34DAP/26DAP1.004181
51DAP/34DAP1.780980.034
52DAP/51DAP0.738380.151
53DAP/52DAP0.939580.621
55DAP/53DAP0.890650.515
57DAP/55DAP0.938530.688
62DAP/57DAP1.132170.902
68DAP/62DAP0.998620.863
68DAP/14DAP1.017441

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.774620.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.955740.658
Mature Green Tomato/Ripe Tomato0.64740.042
Immature Eggplant/Mature Eggplant0.935430.493
Ripe Pepper/Ripe Tomato0.549670.293
Mature Eggplant/Ripe Tomato0.977121

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.2618
1-1-2/M820.855530.958
12-2/M821.07315
12-4/M820.8945
1-3/M821.13358
2-1-1/M821.20173
2-1/M821.137311
2-6/M82N/AN/A
3-2/M821.17938
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.978921
5-3/M820.94488
6-2/M821.281671
6-3/M821.12741
7-1/M821.45503
7-2/M82N/AN/A
9-3-2/M820.88375

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.115070.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.928671
DC3000/delta hrp 6h1.099271
DC3000/delta hrp 12h1.024561
DC3000/delta hrp 24h0.49121

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.116261
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.951771
Exp 36h0.854560.504
Exp 60h1.150190.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001561
Var 0hN/AN/A
Var 12h I row2-row10.901920.565
Var 12h NI row2-row11.215031
Var 36h I row2-row11.10070.908
Var 36h NI row2-row10.634440.549
Var 60h I row2-row10.9590.952
Var 60h NI row2-row10.832770.69
Time course 0hI-0hNI0.960850.755
Time course 12hI-12hNI0.978080.889
Time course 36hI-36hNI1.223730.005
Time course 60hI-60hNI3.205920.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.094980.277
transgenic ySAMdc/azygous control (breaker)1.060241
transgenic ySAMdc/azygous control (red)1.010191

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006040.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.923530.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.923291
Manapal/WT (break)0.999091
Manapal/WT (red)1.042071