Expression of 1-1-6.3.20.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03427 | 0.927 |
27DAP/17DAP | 1.31433 | 0.8 |
39DAP/27DAP | 1.15492 | 1 |
41DAP/39DAP | 1.017 | 0.988 |
42DAP/41DAP | 0.75602 | 0.774 |
43DAP/42DAP | 1.15349 | 0.873 |
47DAP/43DAP | 0.73349 | 0.251 |
52DAP/47DAP | 1.27506 | 0.718 |
57DAP/52DAP | 0.75229 | 0.6 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93036 | 0.262 |
17DAP/reference | 1.00615 | 0.813 |
27DAP/reference | 0.9874 | 0.741 |
39DAP/reference | 0.9849 | 0.797 |
41DAP/reference | 1.06597 | 0.421 |
42DAP/reference | 0.89445 | 0.01 |
43DAP/reference | 1.04601 | 0.73 |
47DAP/reference | 0.96978 | 0.345 |
52DAP/reference | 0.93324 | 0.25 |
57DAP/reference | 0.91898 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17966 | 0.398 |
27DAP/17DAP | 0.91782 | 0.782 |
39DAP/27DAP | 1.14704 | 0.636 |
41DAP/39DAP | 0.98474 | 1 |
42DAP/41DAP | 1.0312 | 0.927 |
43DAP/42DAP | 1.08172 | 0.788 |
47DAP/43DAP | 1.02925 | 0.951 |
52DAP/47DAP | 0.95145 | 0.834 |
57DAP/52DAP | 1.05794 | 1 |
57DAP/7DAP | 0.96354 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08193 | 0.613 |
17DAP/reference | 0.83398 | 0.044 |
27DAP/reference | 0.77489 | 0.01 |
39DAP/reference | 0.84312 | 0.109 |
41DAP/reference | 0.83011 | 0.07 |
42DAP/reference | 0.86974 | 0.106 |
43DAP/reference | 0.75407 | 0.016 |
47DAP/reference | 1.03305 | 0.901 |
52DAP/reference | 1.0298 | 1 |
57DAP/reference | 0.9623 | 0.353 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9295 | 0.342 |
17DAP/reference | 0.88098 | 0.124 |
27DAP/reference | 0.9569 | 0.423 |
39DAP/reference | 0.8619 | 0.06 |
41DAP/reference | 0.86129 | 0.085 |
42DAP/reference | 0.83738 | 0.012 |
43DAP/reference | 0.87573 | 0.17 |
47DAP/reference | 0.9288 | 0.154 |
52DAP/reference | 0.86108 | 0.015 |
57DAP/reference | 0.89193 | 0.125 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91159 | 0.104 |
17DAP/reference | 0.85004 | 0.205 |
27DAP/reference | 0.74179 | 0.031 |
39DAP/reference | 0.85595 | 0.046 |
41DAP/reference | 0.91562 | 0.167 |
42DAP/reference | 0.99051 | 0.816 |
43DAP/reference | 0.88107 | 0.281 |
47DAP/reference | 0.96407 | 0.357 |
52DAP/reference | 0.94324 | 0.538 |
57DAP/reference | 0.87705 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15908 | 0.966 |
26DAP/20DAP | 1.52693 | 0.196 |
34DAP/26DAP | 1.00418 | 1 |
51DAP/34DAP | 1.78098 | 0.034 |
52DAP/51DAP | 0.73838 | 0.151 |
53DAP/52DAP | 0.93958 | 0.621 |
55DAP/53DAP | 0.89065 | 0.515 |
57DAP/55DAP | 0.93853 | 0.688 |
62DAP/57DAP | 1.13217 | 0.902 |
68DAP/62DAP | 0.99862 | 0.863 |
68DAP/14DAP | 1.01744 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77462 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95574 | 0.658 |
Mature Green Tomato/Ripe Tomato | 0.6474 | 0.042 |
Immature Eggplant/Mature Eggplant | 0.93543 | 0.493 |
Ripe Pepper/Ripe Tomato | 0.54967 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.97712 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.2618 | |
1-1-2/M82 | 0.85553 | 0.958 |
12-2/M82 | 1.07315 | |
12-4/M82 | 0.8945 | |
1-3/M82 | 1.13358 | |
2-1-1/M82 | 1.20173 | |
2-1/M82 | 1.13731 | 1 |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.17938 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.97892 | 1 |
5-3/M82 | 0.94488 | |
6-2/M82 | 1.28167 | 1 |
6-3/M82 | 1.1274 | 1 |
7-1/M82 | 1.45503 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.88375 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11507 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92867 | 1 |
DC3000/delta hrp 6h | 1.09927 | 1 |
DC3000/delta hrp 12h | 1.02456 | 1 |
DC3000/delta hrp 24h | 0.49121 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11626 | 1 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95177 | 1 |
Exp 36h | 0.85456 | 0.504 |
Exp 60h | 1.15019 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00156 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.90192 | 0.565 |
Var 12h NI row2-row1 | 1.21503 | 1 |
Var 36h I row2-row1 | 1.1007 | 0.908 |
Var 36h NI row2-row1 | 0.63444 | 0.549 |
Var 60h I row2-row1 | 0.959 | 0.952 |
Var 60h NI row2-row1 | 0.83277 | 0.69 |
Time course 0hI-0hNI | 0.96085 | 0.755 |
Time course 12hI-12hNI | 0.97808 | 0.889 |
Time course 36hI-36hNI | 1.22373 | 0.005 |
Time course 60hI-60hNI | 3.20592 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09498 | 0.277 |
transgenic ySAMdc/azygous control (breaker) | 1.06024 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01019 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00604 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92353 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92329 | 1 |
Manapal/WT (break) | 0.99909 | 1 |
Manapal/WT (red) | 1.04207 | 1 |
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