Expression of 1-1-6.3.20.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19003 | 0.697 |
27DAP/17DAP | 1.24291 | 0.778 |
39DAP/27DAP | 0.96648 | 0.7 |
41DAP/39DAP | 1.07665 | 0.96 |
42DAP/41DAP | 1.22356 | 0.712 |
43DAP/42DAP | 1.00661 | 0.937 |
47DAP/43DAP | 1.12969 | 0.873 |
52DAP/47DAP | 1.05965 | 0.943 |
57DAP/52DAP | 0.73582 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07877 | 0.9 |
17DAP/reference | 0.82297 | 0.169 |
27DAP/reference | 0.9108 | 0.339 |
39DAP/reference | 0.68638 | 0.01 |
41DAP/reference | 0.86219 | 0.341 |
42DAP/reference | 1.09811 | |
43DAP/reference | 0.7182 | 0.016 |
47DAP/reference | 0.7628 | 0.279 |
52DAP/reference | 0.81537 | 0.183 |
57DAP/reference | 0.42835 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20223 | 0.91 |
27DAP/17DAP | 1.10835 | 0.831 |
39DAP/27DAP | 1.12645 | 0.596 |
41DAP/39DAP | 1.55004 | 0.119 |
42DAP/41DAP | 0.8224 | 0.416 |
43DAP/42DAP | 4.88925 | 0.297 |
47DAP/43DAP | 1.393 | 0.641 |
52DAP/47DAP | 0.797 | 0.778 |
57DAP/52DAP | 1.28207 | 0.282 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92053 | 0.138 |
17DAP/reference | 0.96595 | 0.389 |
27DAP/reference | 0.87017 | 0.109 |
39DAP/reference | 0.95447 | 0.354 |
41DAP/reference | 0.88369 | 0.103 |
42DAP/reference | 0.78621 | 0.013 |
43DAP/reference | 0.91392 | 0.279 |
47DAP/reference | 0.79866 | 0.066 |
52DAP/reference | 1.04665 | 0.732 |
57DAP/reference | 0.97408 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83656 | 0.157 |
17DAP/reference | 0.84632 | 0.113 |
27DAP/reference | 0.73836 | 0.104 |
39DAP/reference | 0.76758 | 0.018 |
41DAP/reference | 1.15874 | 1 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.25111 | 0.308 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.77385 | 0.072 |
57DAP/reference | 0.73783 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8714 | 0.049 |
17DAP/reference | 0.99563 | 0.81 |
27DAP/reference | 0.99996 | 0.843 |
39DAP/reference | 1.05043 | 0.67 |
41DAP/reference | 0.86045 | 0.077 |
42DAP/reference | 0.82387 | 0.059 |
43DAP/reference | 1.02978 | 0.744 |
47DAP/reference | 0.71287 | 0.007 |
52DAP/reference | 0.79893 | 0.153 |
57DAP/reference | 0.97966 | 0.73 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1824 | 0.966 |
26DAP/20DAP | 0.93432 | 1 |
34DAP/26DAP | 0.91781 | 0.874 |
51DAP/34DAP | 0.98753 | 0.946 |
52DAP/51DAP | 1.29544 | 0.676 |
53DAP/52DAP | 1.6804 | 0.384 |
55DAP/53DAP | 1.43891 | 0.693 |
57DAP/55DAP | 0.62895 | 0.03 |
62DAP/57DAP | 1.03005 | 1 |
68DAP/62DAP | 1.12235 | 0.962 |
68DAP/14DAP | 1.15781 | 0.436 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.82978 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.6028 | 0.256 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.78643 | 0.958 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97338 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.55396 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.79816 | 1 |
4-3-2/M82 | 0.86088 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.12321 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.90443 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.03267 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.26379 | |
IL2-6/WTpooled | 0.94697 | 0.348 |
IL7-5/WTpooled | 0.90189 | |
IL7-3/WTpooled | 1.48718 | 1 |
IL12-4/WTpooled | 1.19951 | 0.673 |
IL1-4/WTpooled | 1.47892 | 1 |
WT/WTpooled | 1.01229 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28769 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0107 | 0.921 |
DC3000/delta hrp 6h | 1.58655 | 0.582 |
DC3000/delta hrp 12h | 1.00533 | 1 |
DC3000/delta hrp 24h | 1.89667 | 0.113 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.01199 | |
DC3000 delta B/DC3000 delta AB | 0.94785 | 0.657 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.58152 | 0.228 |
Exp 36h | 1.19334 | 1 |
Exp 60h | 1.74859 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.09968 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.99413 | 1 |
Var 12h NI row2-row1 | 1.15752 | 1 |
Var 36h I row2-row1 | 1.08317 | 1 |
Var 36h NI row2-row1 | 0.97928 | 0.852 |
Var 60h I row2-row1 | 1.07078 | 1 |
Var 60h NI row2-row1 | 0.47594 | 0.516 |
Time course 0hI-0hNI | 1.02776 | 1 |
Time course 12hI-12hNI | 1.282 | 0.746 |
Time course 36hI-36hNI | 2.60875 | 0.005 |
Time course 60hI-60hNI | 2.62171 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.30803 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 1.57697 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.13671 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06732 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 8.84918 | 0.087 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.88131 | 0.607 |
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