Expression of 1-1-6.3.20.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.088750.964
27DAP/17DAP1.202550.841
39DAP/27DAP0.701850.286
41DAP/39DAP1.648730.288
42DAP/41DAP1.060680.978
43DAP/42DAP1.021780.937
47DAP/43DAP1.414580.455
52DAP/47DAP0.924370.742
57DAP/52DAP1.04730.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.860730.211
17DAP/reference1.01439
27DAP/reference1.37135
39DAP/reference0.58861
41DAP/reference1.019981
42DAP/reference1.03630.656
43DAP/reference0.944930.594
47DAP/reference1.128590.119
52DAP/reference1.085741
57DAP/reference0.901030.176

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.924560.194
27DAP/17DAP0.967370.748
39DAP/27DAP1.064790.496
41DAP/39DAP1.102450.531
42DAP/41DAP0.998050.902
43DAP/42DAP0.990520.875
47DAP/43DAP0.996070.99
52DAP/47DAP0.976410.837
57DAP/52DAP0.995830.869
57DAP/7DAP1.033581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.117940.368
17DAP/reference1.020691
27DAP/reference1.037010.453
39DAP/reference1.001231
41DAP/reference0.874430.06
42DAP/reference0.9050.014
43DAP/reference0.872350.115
47DAP/reference0.917480.383
52DAP/reference1.059050.684
57DAP/reference1.119830.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968480.58
17DAP/reference0.922190.099
27DAP/reference0.86130.111
39DAP/reference0.935760.227
41DAP/reference0.914170.148
42DAP/reference0.976230.723
43DAP/reference0.928470.285
47DAP/reference1.29579
52DAP/reference0.9430.031
57DAP/reference1.033460.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.943570.147
17DAP/reference0.968040.364
27DAP/reference0.844540.041
39DAP/reference0.987760.643
41DAP/reference0.94570.293
42DAP/reference0.924250.22
43DAP/reference1.044370.84
47DAP/reference0.951630.383
52DAP/reference0.899330.36
57DAP/reference0.844370.07

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.035470.966
26DAP/20DAP0.943811
34DAP/26DAP1.038731
51DAP/34DAP0.96880.674
52DAP/51DAP0.93611
53DAP/52DAP1.05550.688
55DAP/53DAP0.976980.775
57DAP/55DAP1.045650.764
62DAP/57DAP1.009281
68DAP/62DAP0.922130.641
68DAP/14DAP0.693240.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.943370.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.957990.658
Mature Green Tomato/Ripe Tomato0.764290.256
Immature Eggplant/Mature Eggplant0.964690.079
Ripe Pepper/Ripe Tomato2.191951
Mature Eggplant/Ripe Tomato1.215910.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.996071
1-1-2/M821.063211
12-2/M821.019941
12-4/M820.985860.33
1-3/M820.865520.378
2-1-1/M821.013511
2-1/M821.271091
2-6/M821.044370.695
3-2/M820.977410.451
4-1-1/M821.094161
4-1/M821.013761
4-3-2/M821.089760.253
4-3/M821.073371
5-3/M820.962361
6-2/M821.344281
6-3/M821.11
7-1/M820.98427
7-2/M821.07191
9-3-2/M820.798050.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.274810.493
IL2-6/WTpooled1.4871
IL7-5/WTpooled1.071970.635
IL7-3/WTpooled0.702570.298
IL12-4/WTpooled1.685
IL1-4/WTpooled0.83670.444
WT/WTpooled1.069711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.12540.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.937921
DC3000/delta hrp 6h1.047120.95
DC3000/delta hrp 12h1.245611
DC3000/delta hrp 24h0.966940.966

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.086790.355
DC3000 delta B/DC3000 delta AB1.091550.363

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.906981
Exp 36h1.103781
Exp 60h1.156471

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98991
Var 0hN/AN/A
Var 12h I row2-row11.162110.242
Var 12h NI row2-row10.913270.546
Var 36h I row2-row10.973811
Var 36h NI row2-row11.412081
Var 60h I row2-row11.122160.562
Var 60h NI row2-row11.120951
Time course 0hI-0hNI1.01871
Time course 12hI-12hNI1.047740.724
Time course 36hI-36hNI1.073220.039
Time course 60hI-60hNI1.26570.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.037490.455
transgenic ySAMdc/azygous control (breaker)1.05641
transgenic ySAMdc/azygous control (red)1.217230.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.972420.081

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.838780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.919381
Manapal/WT (break)1.10861
Manapal/WT (red)0.933380.607