Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.3.3.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.05504	0.938
27DAP/17DAP	0.95774	0.911
39DAP/27DAP	0.8878	0.652
41DAP/39DAP	1.08631	0.911
42DAP/41DAP	0.79823	0.774
43DAP/42DAP	1.86938	0.682
47DAP/43DAP	1.23513	0.799
52DAP/47DAP	2.50389	0.273
57DAP/52DAP	0.6625	0.673

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99626	0.756
17DAP/reference	1.17226	0.011
27DAP/reference	1.25449	0.175
39DAP/reference	1.05142	0.762
41DAP/reference	1.14141	0.48
42DAP/reference	1.23318	0.963
43DAP/reference	1.10055	0.73
47DAP/reference	0.84156	0.445
52DAP/reference	N/A	N/A
57DAP/reference	0.89526	0.165

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	N/A	N/A
27DAP/17DAP	3.62837
39DAP/27DAP	2.30285	0.615
41DAP/39DAP	1.20498	0.986
42DAP/41DAP	0.84077	0.508
43DAP/42DAP	1.365
47DAP/43DAP	1.2326	0.88
52DAP/47DAP	0.91478	0.876
57DAP/52DAP	N/A	N/A
57DAP/7DAP	1.73741	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.62602	0.078
17DAP/reference	0.55101	0.013
27DAP/reference	0.80841	0.066
39DAP/reference	0.56981	0.011
41DAP/reference	0.4571	0.013
42DAP/reference	0.4452	0.011
43DAP/reference	0.47756	0.011
47DAP/reference	0.40105
52DAP/reference	0.44656	0.011
57DAP/reference	0.63695	0.017

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.39043	0.024
17DAP/reference	1.05956	0.673
27DAP/reference	2.50799	1
39DAP/reference	N/A	N/A
41DAP/reference	0.89602	0.081
42DAP/reference	0.94821	0.433
43DAP/reference	0.99219	0.801
47DAP/reference	1.0598	0.994
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77015	0.05
17DAP/reference	0.72718	0.217
27DAP/reference	0.58675	0.025
39DAP/reference	0.66866	0.026
41DAP/reference	0.57571	0.019
42DAP/reference	0.58904	0.016
43DAP/reference	0.6787	0.016
47DAP/reference	1.68662
52DAP/reference	0.85478	0.395
57DAP/reference	1.18463	1

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.42896
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.22293	1
51DAP/34DAP	0.82739	0.618
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.08247
55DAP/53DAP	0.7982	0.648
57DAP/55DAP	0.93344
62DAP/57DAP	0.66818
68DAP/62DAP	1.42652
68DAP/14DAP	1.10223	0.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.07975	0.285

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.98684	1
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.14882	0.67
IL7-3/WTpooled	0.70579	0.418
IL12-4/WTpooled	1.1984	0.503
IL1-4/WTpooled	0.91056	0.834
WT/WTpooled	1.10168	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.83919
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.62767	0.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	2.32606	1