Expression of 1-1-6.3.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04165 | 0.964 |
27DAP/17DAP | 0.80767 | 0.381 |
39DAP/27DAP | 0.83472 | 0.421 |
41DAP/39DAP | 1.3331 | 0.227 |
42DAP/41DAP | 1.23574 | 0.825 |
43DAP/42DAP | 0.95836 | 0.827 |
47DAP/43DAP | 0.96999 | 0.864 |
52DAP/47DAP | 1.55272 | 0.238 |
57DAP/52DAP | 0.88337 | 0.462 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18518 | 0.147 |
17DAP/reference | 0.99405 | 0.957 |
27DAP/reference | 0.97982 | 0.711 |
39DAP/reference | 1.0777 | 0.359 |
41DAP/reference | 1.19889 | 0.287 |
42DAP/reference | 1.22372 | 0.21 |
43DAP/reference | 1.14526 | 0.118 |
47DAP/reference | 1.11195 | 0.306 |
52DAP/reference | 1.12708 | 0.195 |
57DAP/reference | 0.77641 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05333 | 0.536 |
27DAP/17DAP | 0.92818 | 0.58 |
39DAP/27DAP | 1.11279 | 0.496 |
41DAP/39DAP | 1.06019 | 0.883 |
42DAP/41DAP | 1.01289 | 1 |
43DAP/42DAP | 0.99991 | 1 |
47DAP/43DAP | 0.99034 | 0.954 |
52DAP/47DAP | 1.04765 | 0.823 |
57DAP/52DAP | 1.0495 | 0.718 |
57DAP/7DAP | 1.17811 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89594 | 0.108 |
17DAP/reference | 0.83233 | 0.013 |
27DAP/reference | 0.87014 | 0.01 |
39DAP/reference | 0.84074 | 0.011 |
41DAP/reference | 0.85457 | 0.016 |
42DAP/reference | 0.80848 | 0.01 |
43DAP/reference | 0.88171 | 0.029 |
47DAP/reference | 0.87896 | 0.101 |
52DAP/reference | 0.83764 | 0.02 |
57DAP/reference | 0.82177 | 0.038 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20539 | 0.05 |
17DAP/reference | 1.1617 | 0.05 |
27DAP/reference | 1.13251 | 0.225 |
39DAP/reference | 1.14164 | 0.103 |
41DAP/reference | 1.08369 | 0.831 |
42DAP/reference | 1.05905 | 0.715 |
43DAP/reference | 1.30453 | 0.103 |
47DAP/reference | 0.89596 | 0.049 |
52DAP/reference | 1.15768 | 0.012 |
57DAP/reference | 1.21606 | 0.042 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84459 | 0.071 |
17DAP/reference | 1.01581 | 0.956 |
27DAP/reference | 0.83479 | 0.024 |
39DAP/reference | 0.8469 | 0.013 |
41DAP/reference | 1.001 | 0.826 |
42DAP/reference | 0.97347 | 0.671 |
43DAP/reference | 0.96915 | 0.484 |
47DAP/reference | 0.97828 | 0.538 |
52DAP/reference | 0.92145 | 0.395 |
57DAP/reference | 1.09533 | 0.371 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10818 | 0.966 |
26DAP/20DAP | 0.91735 | 0.512 |
34DAP/26DAP | 1.0534 | 0.819 |
51DAP/34DAP | 1.06154 | 0.666 |
52DAP/51DAP | 1.06785 | 0.232 |
53DAP/52DAP | 1.01992 | 0.882 |
55DAP/53DAP | 1.00126 | 0.951 |
57DAP/55DAP | 0.98252 | 0.911 |
62DAP/57DAP | 1.30914 | 0.622 |
68DAP/62DAP | 0.81316 | 0.378 |
68DAP/14DAP | 0.91556 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.15701 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96749 | 0.635 |
Mature Green Tomato/Ripe Tomato | 1.01092 | 0.774 |
Immature Eggplant/Mature Eggplant | 0.9003 | 0.117 |
Ripe Pepper/Ripe Tomato | 0.95382 | 1 |
Mature Eggplant/Ripe Tomato | 0.51068 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99167 | 0.961 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.28892 | 1 |
12-4/M82 | 0.93202 | 1 |
1-3/M82 | 1.0547 | |
2-1-1/M82 | 1.06513 | |
2-1/M82 | 0.92104 | |
2-6/M82 | 1.04275 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.08807 | 1 |
4-1/M82 | 0.94498 | 1 |
4-3-2/M82 | 1.26668 | |
4-3/M82 | 1.08842 | 1 |
5-3/M82 | 0.916 | 0.49 |
6-2/M82 | 0.90576 | |
6-3/M82 | 0.84097 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.03318 | 1 |
9-3-2/M82 | 0.88158 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04166 | 1 |
IL2-6/WTpooled | 1.39869 | 0.584 |
IL7-5/WTpooled | 1.21163 | 0.792 |
IL7-3/WTpooled | 0.66171 | 0.31 |
IL12-4/WTpooled | 0.94799 | 1 |
IL1-4/WTpooled | 1.07782 | 1 |
WT/WTpooled | 0.92967 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86471 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03244 | 0.875 |
DC3000/delta hrp 6h | 0.98312 | 0.95 |
DC3000/delta hrp 12h | 1.01198 | 1 |
DC3000/delta hrp 24h | 1.00066 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.90017 | 0.365 |
DC3000 delta B/DC3000 delta AB | 0.97296 | 0.638 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71087 | 1 |
Exp 36h | 0.68124 | 0.406 |
Exp 60h | 0.64387 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97513 | 1 |
Var 0h | 0.97103 | 1 |
Var 12h I row2-row1 | 0.96883 | 0.39 |
Var 12h NI row2-row1 | 1.16063 | 0.649 |
Var 36h I row2-row1 | 0.95442 | 0.805 |
Var 36h NI row2-row1 | 1.01599 | 1 |
Var 60h I row2-row1 | 1.46847 | 1 |
Var 60h NI row2-row1 | 1.0333 | 0.904 |
Time course 0hI-0hNI | 0.95446 | 0.56 |
Time course 12hI-12hNI | 1.0093 | 0.854 |
Time course 36hI-36hNI | 0.92187 | 0.084 |
Time course 60hI-60hNI | 0.50461 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.14259 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 1.0299 | 1 |
transgenic ySAMdc/azygous control (red) | 1.02518 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02746 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.42148 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.5008 | 0.14 |
Manapal/WT (break) | 1.82335 | 0.13 |
Manapal/WT (red) | 1.03658 | 1 |
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