Expression of 1-1-6.3.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.041650.964
27DAP/17DAP0.807670.381
39DAP/27DAP0.834720.421
41DAP/39DAP1.33310.227
42DAP/41DAP1.235740.825
43DAP/42DAP0.958360.827
47DAP/43DAP0.969990.864
52DAP/47DAP1.552720.238
57DAP/52DAP0.883370.462

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.185180.147
17DAP/reference0.994050.957
27DAP/reference0.979820.711
39DAP/reference1.07770.359
41DAP/reference1.198890.287
42DAP/reference1.223720.21
43DAP/reference1.145260.118
47DAP/reference1.111950.306
52DAP/reference1.127080.195
57DAP/reference0.776410.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.053330.536
27DAP/17DAP0.928180.58
39DAP/27DAP1.112790.496
41DAP/39DAP1.060190.883
42DAP/41DAP1.012891
43DAP/42DAP0.999911
47DAP/43DAP0.990340.954
52DAP/47DAP1.047650.823
57DAP/52DAP1.04950.718
57DAP/7DAP1.178110.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895940.108
17DAP/reference0.832330.013
27DAP/reference0.870140.01
39DAP/reference0.840740.011
41DAP/reference0.854570.016
42DAP/reference0.808480.01
43DAP/reference0.881710.029
47DAP/reference0.878960.101
52DAP/reference0.837640.02
57DAP/reference0.821770.038

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.205390.05
17DAP/reference1.16170.05
27DAP/reference1.132510.225
39DAP/reference1.141640.103
41DAP/reference1.083690.831
42DAP/reference1.059050.715
43DAP/reference1.304530.103
47DAP/reference0.895960.049
52DAP/reference1.157680.012
57DAP/reference1.216060.042

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.844590.071
17DAP/reference1.015810.956
27DAP/reference0.834790.024
39DAP/reference0.84690.013
41DAP/reference1.0010.826
42DAP/reference0.973470.671
43DAP/reference0.969150.484
47DAP/reference0.978280.538
52DAP/reference0.921450.395
57DAP/reference1.095330.371

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.108180.966
26DAP/20DAP0.917350.512
34DAP/26DAP1.05340.819
51DAP/34DAP1.061540.666
52DAP/51DAP1.067850.232
53DAP/52DAP1.019920.882
55DAP/53DAP1.001260.951
57DAP/55DAP0.982520.911
62DAP/57DAP1.309140.622
68DAP/62DAP0.813160.378
68DAP/14DAP0.915561

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.157010.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.967490.635
Mature Green Tomato/Ripe Tomato1.010920.774
Immature Eggplant/Mature Eggplant0.90030.117
Ripe Pepper/Ripe Tomato0.953821
Mature Eggplant/Ripe Tomato0.510680.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.991670.961
1-1-2/M82N/AN/A
12-2/M821.288921
12-4/M820.932021
1-3/M821.0547
2-1-1/M821.06513
2-1/M820.92104
2-6/M821.042751
3-2/M82N/AN/A
4-1-1/M821.088071
4-1/M820.944981
4-3-2/M821.26668
4-3/M821.088421
5-3/M820.9160.49
6-2/M820.90576
6-3/M820.84097
7-1/M82N/AN/A
7-2/M821.033181
9-3-2/M820.881581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.041661
IL2-6/WTpooled1.398690.584
IL7-5/WTpooled1.211630.792
IL7-3/WTpooled0.661710.31
IL12-4/WTpooled0.947991
IL1-4/WTpooled1.077821
WT/WTpooled0.929671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.864710.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032440.875
DC3000/delta hrp 6h0.983120.95
DC3000/delta hrp 12h1.011981
DC3000/delta hrp 24h1.000661

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.900170.365
DC3000 delta B/DC3000 delta AB0.972960.638

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.710871
Exp 36h0.681240.406
Exp 60h0.643870.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.975131
Var 0h0.971031
Var 12h I row2-row10.968830.39
Var 12h NI row2-row11.160630.649
Var 36h I row2-row10.954420.805
Var 36h NI row2-row11.015991
Var 60h I row2-row11.468471
Var 60h NI row2-row11.03330.904
Time course 0hI-0hNI0.954460.56
Time course 12hI-12hNI1.00930.854
Time course 36hI-36hNI0.921870.084
Time course 60hI-60hNI0.504610.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.142590.294
transgenic ySAMdc/azygous control (breaker)1.02991
transgenic ySAMdc/azygous control (red)1.025180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027460.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.421480.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.50080.14
Manapal/WT (break)1.823350.13
Manapal/WT (red)1.036581