Expression of 1-1-6.3.3.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89501 | 0.543 |
27DAP/17DAP | 0.85155 | 0.661 |
39DAP/27DAP | 0.85454 | 0.583 |
41DAP/39DAP | 0.7543 | 0.294 |
42DAP/41DAP | 1.68337 | 0.73 |
43DAP/42DAP | 1.2202 | 0.595 |
47DAP/43DAP | 0.92192 | 0.71 |
52DAP/47DAP | 1.01994 | 0.9 |
57DAP/52DAP | 1.33595 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84144 | 0.162 |
17DAP/reference | 0.91989 | 0.194 |
27DAP/reference | 0.90339 | 0.152 |
39DAP/reference | 0.91693 | 0.324 |
41DAP/reference | 0.92126 | 0.542 |
42DAP/reference | 0.84506 | 0.028 |
43DAP/reference | 0.9781 | 0.861 |
47DAP/reference | 0.89742 | 0.174 |
52DAP/reference | 0.99824 | 0.689 |
57DAP/reference | 1.16934 | 0.22 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20446 | 0.508 |
27DAP/17DAP | 0.70743 | 0.418 |
39DAP/27DAP | 0.9601 | 0.737 |
41DAP/39DAP | 1.66325 | 0.407 |
42DAP/41DAP | 1.04274 | 0.869 |
43DAP/42DAP | 1.02087 | 1 |
47DAP/43DAP | 1.07508 | 0.865 |
52DAP/47DAP | 1.0178 | 0.962 |
57DAP/52DAP | 1.12865 | 0.745 |
57DAP/7DAP | 1.31766 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23688 | 0.126 |
17DAP/reference | 1.685 | 0.006 |
27DAP/reference | 1.66661 | 0.009 |
39DAP/reference | 1.55357 | 0.018 |
41DAP/reference | 1.49418 | 0.05 |
42DAP/reference | 1.58838 | 0.008 |
43DAP/reference | 1.60172 | 0.021 |
47DAP/reference | 1.22215 | 0.43 |
52DAP/reference | 1.41394 | 0.055 |
57DAP/reference | 1.43294 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95407 | 0.475 |
17DAP/reference | 0.90264 | 0.113 |
27DAP/reference | 0.94949 | 0.352 |
39DAP/reference | 1.00068 | 0.682 |
41DAP/reference | 0.86879 | 0.081 |
42DAP/reference | 0.84563 | 0.017 |
43DAP/reference | 0.76163 | 0.011 |
47DAP/reference | 0.82774 | 0.028 |
52DAP/reference | 1.0488 | 0.498 |
57DAP/reference | 0.81524 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3088 | 0.109 |
17DAP/reference | 1.25596 | 0.612 |
27DAP/reference | 1.74417 | 0.023 |
39DAP/reference | 1.4253 | 0.022 |
41DAP/reference | 1.5476 | 0.008 |
42DAP/reference | 1.49208 | 0.012 |
43DAP/reference | 1.46073 | 0.032 |
47DAP/reference | 0.98279 | 0.538 |
52DAP/reference | 1.48763 | 0.126 |
57DAP/reference | 1.42016 | 0.014 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13628 | 0.966 |
26DAP/20DAP | 1.35929 | |
34DAP/26DAP | 1.01273 | |
51DAP/34DAP | 1.78887 | 0.637 |
52DAP/51DAP | 1.10389 | 1 |
53DAP/52DAP | 1.00287 | 0.96 |
55DAP/53DAP | 0.92004 | 0.784 |
57DAP/55DAP | 0.77885 | 0.219 |
62DAP/57DAP | 1.31037 | 0.35 |
68DAP/62DAP | 1.50929 | 0.367 |
68DAP/14DAP | 1.68365 | 0.048 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04266 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.50077 | 0.437 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.60578 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.30725 | |
1-1-2/M82 | 1.07842 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.82436 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.71063 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.77523 | 0.286 |
5-3/M82 | 1.10585 | 1 |
6-2/M82 | 0.56901 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87285 | 0.247 |
IL2-6/WTpooled | 1.04788 | 0.46 |
IL7-5/WTpooled | 1.06481 | 1 |
IL7-3/WTpooled | 1.01638 | 1 |
IL12-4/WTpooled | 0.92787 | 0.71 |
IL1-4/WTpooled | 1.06509 | 1 |
WT/WTpooled | 0.93066 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85761 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87097 | 1 |
DC3000/delta hrp 6h | 0.75817 | 0.95 |
DC3000/delta hrp 12h | 1.05727 | 1 |
DC3000/delta hrp 24h | 0.75948 | 0.241 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.72861 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.77687 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99654 | 1 |
Var 0h | 1.8491 | 0.782 |
Var 12h I row2-row1 | 0.93036 | 0.565 |
Var 12h NI row2-row1 | 1.2353 | |
Var 36h I row2-row1 | 0.87131 | 0.575 |
Var 36h NI row2-row1 | 0.68475 | 0.378 |
Var 60h I row2-row1 | 0.52556 | |
Var 60h NI row2-row1 | 0.9263 | 1 |
Time course 0hI-0hNI | 0.98202 | 0.943 |
Time course 12hI-12hNI | 0.96231 | 0.815 |
Time course 36hI-36hNI | 1.45457 | 0.58 |
Time course 60hI-60hNI | 0.35799 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03412 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.17453 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.2216 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95126 | 0.156 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1038 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.77084 | 0.084 |
Manapal/WT (break) | 1.36731 | 0.381 |
Manapal/WT (red) | 2.3856 | 0.108 |
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