Expression of 1-1-6.3.3.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.895010.543
27DAP/17DAP0.851550.661
39DAP/27DAP0.854540.583
41DAP/39DAP0.75430.294
42DAP/41DAP1.683370.73
43DAP/42DAP1.22020.595
47DAP/43DAP0.921920.71
52DAP/47DAP1.019940.9
57DAP/52DAP1.335950.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.841440.162
17DAP/reference0.919890.194
27DAP/reference0.903390.152
39DAP/reference0.916930.324
41DAP/reference0.921260.542
42DAP/reference0.845060.028
43DAP/reference0.97810.861
47DAP/reference0.897420.174
52DAP/reference0.998240.689
57DAP/reference1.169340.22

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.204460.508
27DAP/17DAP0.707430.418
39DAP/27DAP0.96010.737
41DAP/39DAP1.663250.407
42DAP/41DAP1.042740.869
43DAP/42DAP1.020871
47DAP/43DAP1.075080.865
52DAP/47DAP1.01780.962
57DAP/52DAP1.128650.745
57DAP/7DAP1.317661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.236880.126
17DAP/reference1.6850.006
27DAP/reference1.666610.009
39DAP/reference1.553570.018
41DAP/reference1.494180.05
42DAP/reference1.588380.008
43DAP/reference1.601720.021
47DAP/reference1.222150.43
52DAP/reference1.413940.055
57DAP/reference1.432940.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954070.475
17DAP/reference0.902640.113
27DAP/reference0.949490.352
39DAP/reference1.000680.682
41DAP/reference0.868790.081
42DAP/reference0.845630.017
43DAP/reference0.761630.011
47DAP/reference0.827740.028
52DAP/reference1.04880.498
57DAP/reference0.815240.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.30880.109
17DAP/reference1.255960.612
27DAP/reference1.744170.023
39DAP/reference1.42530.022
41DAP/reference1.54760.008
42DAP/reference1.492080.012
43DAP/reference1.460730.032
47DAP/reference0.982790.538
52DAP/reference1.487630.126
57DAP/reference1.420160.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.136280.966
26DAP/20DAP1.35929
34DAP/26DAP1.01273
51DAP/34DAP1.788870.637
52DAP/51DAP1.103891
53DAP/52DAP1.002870.96
55DAP/53DAP0.920040.784
57DAP/55DAP0.778850.219
62DAP/57DAP1.310370.35
68DAP/62DAP1.509290.367
68DAP/14DAP1.683650.048

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.042661

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.500770.437
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.60578

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.30725
1-1-2/M821.07842
12-2/M82N/AN/A
12-4/M820.824360.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.71063
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.775230.286
5-3/M821.105851
6-2/M820.56901
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.872850.247
IL2-6/WTpooled1.047880.46
IL7-5/WTpooled1.064811
IL7-3/WTpooled1.016381
IL12-4/WTpooled0.927870.71
IL1-4/WTpooled1.065091
WT/WTpooled0.930661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.857610.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.870971
DC3000/delta hrp 6h0.758170.95
DC3000/delta hrp 12h1.057271
DC3000/delta hrp 24h0.759480.241

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.728611
Exp 36hN/AN/A
Exp 60h0.776870.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996541
Var 0h1.84910.782
Var 12h I row2-row10.930360.565
Var 12h NI row2-row11.2353
Var 36h I row2-row10.871310.575
Var 36h NI row2-row10.684750.378
Var 60h I row2-row10.52556
Var 60h NI row2-row10.92631
Time course 0hI-0hNI0.982020.943
Time course 12hI-12hNI0.962310.815
Time course 36hI-36hNI1.454570.58
Time course 60hI-60hNI0.357990.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.034120.511
transgenic ySAMdc/azygous control (breaker)1.174530.248
transgenic ySAMdc/azygous control (red)1.22160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.951260.156

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.10380.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.770840.084
Manapal/WT (break)1.367310.381
Manapal/WT (red)2.38560.108