Expression of 1-1-6.3.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.998840.83
27DAP/17DAP1.071770.881
39DAP/27DAP0.917420.62
41DAP/39DAP0.960460.623
42DAP/41DAP1.022921
43DAP/42DAP0.844910.736
47DAP/43DAP1.117150.538
52DAP/47DAP1.35360.468
57DAP/52DAP0.904740.765

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.92130.277
17DAP/reference1.186320.384
27DAP/reference1.415250.096
39DAP/reference1.420870.413
41DAP/reference1.150510.287
42DAP/reference1.66780.113
43DAP/reference1.901760.074
47DAP/reference1.568840.391
52DAP/reference1.323270.083
57DAP/reference1.564150.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.158920.65
27DAP/17DAP1.067960.909
39DAP/27DAP1.003481
41DAP/39DAP1.32190.439
42DAP/41DAP0.967450.715
43DAP/42DAP1.03930.746
47DAP/43DAP1.086050.674
52DAP/47DAP0.97730.907
57DAP/52DAP1.011611
57DAP/7DAP1.00051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115630.613
17DAP/reference1.196110.019
27DAP/reference1.071570.197
39DAP/reference1.034130.819
41DAP/reference1.18090.191
42DAP/reference1.206380.308
43DAP/reference1.106750.364
47DAP/reference0.950260.504
52DAP/reference1.154150.197
57DAP/reference1.225350.033

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.841250.019
17DAP/reference0.756990.003
27DAP/reference0.896160.129
39DAP/reference0.880790.099
41DAP/reference0.962940.242
42DAP/reference0.98830.534
43DAP/reference0.874840.229
47DAP/reference0.934580.145
52DAP/reference0.980320.433
57DAP/reference0.672650.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.170140.162
17DAP/reference0.990310.751
27DAP/reference1.093670.357
39DAP/reference1.139040.057
41DAP/reference1.030180.939
42DAP/reference1.088630.3
43DAP/reference1.057560.608
47DAP/reference1.092880.519
52DAP/reference1.135060.549
57DAP/reference1.224790.204

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.087170.752
26DAP/20DAP1.082380.855
34DAP/26DAP0.927010.898
51DAP/34DAP1.464260.785
52DAP/51DAP1.220270.689
53DAP/52DAP1.152890.688
55DAP/53DAP1.151180.608
57DAP/55DAP0.795920.187
62DAP/57DAP1.1720.393
68DAP/62DAP1.463310.182
68DAP/14DAP1.100750.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.719570.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.42316
Mature Green Tomato/Ripe Tomato1.099411
Immature Eggplant/Mature Eggplant2.353630.267
Ripe Pepper/Ripe Tomato0.87607
Mature Eggplant/Ripe Tomato1.71344

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.993261
1-1-2/M821.08061
12-2/M82N/AN/A
12-4/M821.13553
1-3/M820.53495
2-1-1/M821.957050.764
2-1/M82N/AN/A
2-6/M821.103970.594
3-2/M820.92503
4-1-1/M821.23850.915
4-1/M821.50612
4-3-2/M82N/AN/A
4-3/M820.73406
5-3/M821.03391
6-2/M820.965061
6-3/M821.034041
7-1/M82N/AN/A
7-2/M821.009751
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.001051
IL2-6/WTpooled1.2130.419
IL7-5/WTpooled1.718470.792
IL7-3/WTpooled1.117561
IL12-4/WTpooled1.103310.839
IL1-4/WTpooled1.083341
WT/WTpooled0.86931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.304110.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.118440.692
DC3000/delta hrp 6h1.029770.95
DC3000/delta hrp 12h1.154141
DC3000/delta hrp 24h1.090670.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.30551
Exp 36h1.622250.693
Exp 60h1.478580.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982211
Var 0h1.151960.936
Var 12h I row2-row10.993641
Var 12h NI row2-row11.300160.649
Var 36h I row2-row10.905791
Var 36h NI row2-row11.03679
Var 60h I row2-row11.24523
Var 60h NI row2-row10.965140.572
Time course 0hI-0hNI1.009190.867
Time course 12hI-12hNI1.028910.747
Time course 36hI-36hNI1.239060.07
Time course 60hI-60hNI1.20350.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.026040.347
transgenic ySAMdc/azygous control (breaker)0.975021
transgenic ySAMdc/azygous control (red)0.95621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049480.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.902870.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.721960.172
Manapal/WT (break)0.878731
Manapal/WT (red)1.039441