Expression of 1-1-6.3.3.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99884 | 0.83 |
27DAP/17DAP | 1.07177 | 0.881 |
39DAP/27DAP | 0.91742 | 0.62 |
41DAP/39DAP | 0.96046 | 0.623 |
42DAP/41DAP | 1.02292 | 1 |
43DAP/42DAP | 0.84491 | 0.736 |
47DAP/43DAP | 1.11715 | 0.538 |
52DAP/47DAP | 1.3536 | 0.468 |
57DAP/52DAP | 0.90474 | 0.765 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9213 | 0.277 |
17DAP/reference | 1.18632 | 0.384 |
27DAP/reference | 1.41525 | 0.096 |
39DAP/reference | 1.42087 | 0.413 |
41DAP/reference | 1.15051 | 0.287 |
42DAP/reference | 1.6678 | 0.113 |
43DAP/reference | 1.90176 | 0.074 |
47DAP/reference | 1.56884 | 0.391 |
52DAP/reference | 1.32327 | 0.083 |
57DAP/reference | 1.56415 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15892 | 0.65 |
27DAP/17DAP | 1.06796 | 0.909 |
39DAP/27DAP | 1.00348 | 1 |
41DAP/39DAP | 1.3219 | 0.439 |
42DAP/41DAP | 0.96745 | 0.715 |
43DAP/42DAP | 1.0393 | 0.746 |
47DAP/43DAP | 1.08605 | 0.674 |
52DAP/47DAP | 0.9773 | 0.907 |
57DAP/52DAP | 1.01161 | 1 |
57DAP/7DAP | 1.00051 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11563 | 0.613 |
17DAP/reference | 1.19611 | 0.019 |
27DAP/reference | 1.07157 | 0.197 |
39DAP/reference | 1.03413 | 0.819 |
41DAP/reference | 1.1809 | 0.191 |
42DAP/reference | 1.20638 | 0.308 |
43DAP/reference | 1.10675 | 0.364 |
47DAP/reference | 0.95026 | 0.504 |
52DAP/reference | 1.15415 | 0.197 |
57DAP/reference | 1.22535 | 0.033 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84125 | 0.019 |
17DAP/reference | 0.75699 | 0.003 |
27DAP/reference | 0.89616 | 0.129 |
39DAP/reference | 0.88079 | 0.099 |
41DAP/reference | 0.96294 | 0.242 |
42DAP/reference | 0.9883 | 0.534 |
43DAP/reference | 0.87484 | 0.229 |
47DAP/reference | 0.93458 | 0.145 |
52DAP/reference | 0.98032 | 0.433 |
57DAP/reference | 0.67265 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17014 | 0.162 |
17DAP/reference | 0.99031 | 0.751 |
27DAP/reference | 1.09367 | 0.357 |
39DAP/reference | 1.13904 | 0.057 |
41DAP/reference | 1.03018 | 0.939 |
42DAP/reference | 1.08863 | 0.3 |
43DAP/reference | 1.05756 | 0.608 |
47DAP/reference | 1.09288 | 0.519 |
52DAP/reference | 1.13506 | 0.549 |
57DAP/reference | 1.22479 | 0.204 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08717 | 0.752 |
26DAP/20DAP | 1.08238 | 0.855 |
34DAP/26DAP | 0.92701 | 0.898 |
51DAP/34DAP | 1.46426 | 0.785 |
52DAP/51DAP | 1.22027 | 0.689 |
53DAP/52DAP | 1.15289 | 0.688 |
55DAP/53DAP | 1.15118 | 0.608 |
57DAP/55DAP | 0.79592 | 0.187 |
62DAP/57DAP | 1.172 | 0.393 |
68DAP/62DAP | 1.46331 | 0.182 |
68DAP/14DAP | 1.10075 | 0.915 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.71957 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.42316 | |
Mature Green Tomato/Ripe Tomato | 1.09941 | 1 |
Immature Eggplant/Mature Eggplant | 2.35363 | 0.267 |
Ripe Pepper/Ripe Tomato | 0.87607 | |
Mature Eggplant/Ripe Tomato | 1.71344 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99326 | 1 |
1-1-2/M82 | 1.0806 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.13553 | |
1-3/M82 | 0.53495 | |
2-1-1/M82 | 1.95705 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.10397 | 0.594 |
3-2/M82 | 0.92503 | |
4-1-1/M82 | 1.2385 | 0.915 |
4-1/M82 | 1.50612 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.73406 | |
5-3/M82 | 1.0339 | 1 |
6-2/M82 | 0.96506 | 1 |
6-3/M82 | 1.03404 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.00975 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00105 | 1 |
IL2-6/WTpooled | 1.213 | 0.419 |
IL7-5/WTpooled | 1.71847 | 0.792 |
IL7-3/WTpooled | 1.11756 | 1 |
IL12-4/WTpooled | 1.10331 | 0.839 |
IL1-4/WTpooled | 1.08334 | 1 |
WT/WTpooled | 0.8693 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.30411 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11844 | 0.692 |
DC3000/delta hrp 6h | 1.02977 | 0.95 |
DC3000/delta hrp 12h | 1.15414 | 1 |
DC3000/delta hrp 24h | 1.09067 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.3055 | 1 |
Exp 36h | 1.62225 | 0.693 |
Exp 60h | 1.47858 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98221 | 1 |
Var 0h | 1.15196 | 0.936 |
Var 12h I row2-row1 | 0.99364 | 1 |
Var 12h NI row2-row1 | 1.30016 | 0.649 |
Var 36h I row2-row1 | 0.90579 | 1 |
Var 36h NI row2-row1 | 1.03679 | |
Var 60h I row2-row1 | 1.24523 | |
Var 60h NI row2-row1 | 0.96514 | 0.572 |
Time course 0hI-0hNI | 1.00919 | 0.867 |
Time course 12hI-12hNI | 1.02891 | 0.747 |
Time course 36hI-36hNI | 1.23906 | 0.07 |
Time course 60hI-60hNI | 1.2035 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02604 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 0.97502 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9562 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04948 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90287 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72196 | 0.172 |
Manapal/WT (break) | 0.87873 | 1 |
Manapal/WT (red) | 1.03944 | 1 |
|
|