Expression of 1-1-6.3.3.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869940.456
27DAP/17DAP1.227370.847
39DAP/27DAP1.510420.825
41DAP/39DAP1.054380.985
42DAP/41DAP1.07970.938
43DAP/42DAP1.158751
47DAP/43DAP1.206960.702
52DAP/47DAP0.954050.851
57DAP/52DAP1.155980.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.878240.128
17DAP/reference0.813230.021
27DAP/reference0.860690.152
39DAP/reference0.790350.016
41DAP/reference1.006560.814
42DAP/reference0.938810.287
43DAP/reference0.81990.129
47DAP/reference1.01450.862
52DAP/reference1.061180.407
57DAP/reference1.118730.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.908830.526
27DAP/17DAP1.51480.128
39DAP/27DAP1.019960.898
41DAP/39DAP0.964590.945
42DAP/41DAP1.026190.853
43DAP/42DAP0.938260.576
47DAP/43DAP0.917280.857
52DAP/47DAP1.167160.593
57DAP/52DAP1.606750.059
57DAP/7DAP1.574611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.21120.555
17DAP/reference1.02251
27DAP/reference1.016650.698
39DAP/reference0.868880.23
41DAP/reference1.012080.646
42DAP/reference0.921770.32
43DAP/reference1.088590.569
47DAP/reference0.674740.293
52DAP/reference0.925170.213
57DAP/reference0.958220.341

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994740.869
17DAP/reference0.774330.018
27DAP/reference0.963590.467
39DAP/reference0.823910.173
41DAP/reference0.723020.023
42DAP/reference1.027071
43DAP/reference0.992560.607
47DAP/reference0.754720.015
52DAP/reference0.88740.22
57DAP/reference0.788420.043

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.134470.347
17DAP/reference0.933250.528
27DAP/reference0.926620.302
39DAP/reference1.011450.962
41DAP/reference0.976530.682
42DAP/reference1.100480.459
43DAP/reference0.989240.738
47DAP/reference0.876930.066
52DAP/reference0.903010.376
57DAP/reference1.109810.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.738140.355
26DAP/20DAP0.61651
34DAP/26DAP1.957221
51DAP/34DAP4.54209
52DAP/51DAP0.8849
53DAP/52DAP1.028430.921
55DAP/53DAP1.131160.634
57DAP/55DAP0.74540.159
62DAP/57DAP1.234330.569
68DAP/62DAP1.273620.345
68DAP/14DAP0.827230.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.667380.041

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.411751
Mature Eggplant/Ripe Tomato1.639220.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.151120.694
1-3/M820.81983
2-1-1/M820.93798
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.94564
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.166441
6-2/M821.06772
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.96981
9-3-2/M820.9545

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.5671
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.51889
IL7-3/WTpooled0.83676
IL12-4/WTpooled0.966511
IL1-4/WTpooled0.791520.834
WT/WTpooled0.970171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.059440.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961021
DC3000/delta hrp 6h1.27857
DC3000/delta hrp 12h0.784811
DC3000/delta hrp 24h1.481260.246

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.213151

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.033951
Var 0h1.141550.936
Var 12h I row2-row11.00475
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row11.1373
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.98591
Var 60h NI row2-row11.10807
Time course 0hI-0hNI0.850211
Time course 12hI-12hNI0.891570.424
Time course 36hI-36hNI1.04350.881
Time course 60hI-60hNI1.59930.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.047970.511
transgenic ySAMdc/azygous control (breaker)1.279440.248
transgenic ySAMdc/azygous control (red)0.914211

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.083520.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.834320.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.824990.172
Manapal/WT (break)0.943851
Manapal/WT (red)1.397390.142