Expression of 1-1-6.3.3.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86994 | 0.456 |
27DAP/17DAP | 1.22737 | 0.847 |
39DAP/27DAP | 1.51042 | 0.825 |
41DAP/39DAP | 1.05438 | 0.985 |
42DAP/41DAP | 1.0797 | 0.938 |
43DAP/42DAP | 1.15875 | 1 |
47DAP/43DAP | 1.20696 | 0.702 |
52DAP/47DAP | 0.95405 | 0.851 |
57DAP/52DAP | 1.15598 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87824 | 0.128 |
17DAP/reference | 0.81323 | 0.021 |
27DAP/reference | 0.86069 | 0.152 |
39DAP/reference | 0.79035 | 0.016 |
41DAP/reference | 1.00656 | 0.814 |
42DAP/reference | 0.93881 | 0.287 |
43DAP/reference | 0.8199 | 0.129 |
47DAP/reference | 1.0145 | 0.862 |
52DAP/reference | 1.06118 | 0.407 |
57DAP/reference | 1.11873 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90883 | 0.526 |
27DAP/17DAP | 1.5148 | 0.128 |
39DAP/27DAP | 1.01996 | 0.898 |
41DAP/39DAP | 0.96459 | 0.945 |
42DAP/41DAP | 1.02619 | 0.853 |
43DAP/42DAP | 0.93826 | 0.576 |
47DAP/43DAP | 0.91728 | 0.857 |
52DAP/47DAP | 1.16716 | 0.593 |
57DAP/52DAP | 1.60675 | 0.059 |
57DAP/7DAP | 1.57461 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2112 | 0.555 |
17DAP/reference | 1.0225 | 1 |
27DAP/reference | 1.01665 | 0.698 |
39DAP/reference | 0.86888 | 0.23 |
41DAP/reference | 1.01208 | 0.646 |
42DAP/reference | 0.92177 | 0.32 |
43DAP/reference | 1.08859 | 0.569 |
47DAP/reference | 0.67474 | 0.293 |
52DAP/reference | 0.92517 | 0.213 |
57DAP/reference | 0.95822 | 0.341 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99474 | 0.869 |
17DAP/reference | 0.77433 | 0.018 |
27DAP/reference | 0.96359 | 0.467 |
39DAP/reference | 0.82391 | 0.173 |
41DAP/reference | 0.72302 | 0.023 |
42DAP/reference | 1.02707 | 1 |
43DAP/reference | 0.99256 | 0.607 |
47DAP/reference | 0.75472 | 0.015 |
52DAP/reference | 0.8874 | 0.22 |
57DAP/reference | 0.78842 | 0.043 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13447 | 0.347 |
17DAP/reference | 0.93325 | 0.528 |
27DAP/reference | 0.92662 | 0.302 |
39DAP/reference | 1.01145 | 0.962 |
41DAP/reference | 0.97653 | 0.682 |
42DAP/reference | 1.10048 | 0.459 |
43DAP/reference | 0.98924 | 0.738 |
47DAP/reference | 0.87693 | 0.066 |
52DAP/reference | 0.90301 | 0.376 |
57DAP/reference | 1.10981 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.73814 | 0.355 |
26DAP/20DAP | 0.61651 | |
34DAP/26DAP | 1.95722 | 1 |
51DAP/34DAP | 4.54209 | |
52DAP/51DAP | 0.8849 | |
53DAP/52DAP | 1.02843 | 0.921 |
55DAP/53DAP | 1.13116 | 0.634 |
57DAP/55DAP | 0.7454 | 0.159 |
62DAP/57DAP | 1.23433 | 0.569 |
68DAP/62DAP | 1.27362 | 0.345 |
68DAP/14DAP | 0.82723 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.66738 | 0.041 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.41175 | 1 |
Mature Eggplant/Ripe Tomato | 1.63922 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.15112 | 0.694 |
1-3/M82 | 0.81983 | |
2-1-1/M82 | 0.93798 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.94564 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.16644 | 1 |
6-2/M82 | 1.06772 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.96981 | |
9-3-2/M82 | 0.9545 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.5671 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.51889 | |
IL7-3/WTpooled | 0.83676 | |
IL12-4/WTpooled | 0.96651 | 1 |
IL1-4/WTpooled | 0.79152 | 0.834 |
WT/WTpooled | 0.97017 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05944 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96102 | 1 |
DC3000/delta hrp 6h | 1.27857 | |
DC3000/delta hrp 12h | 0.78481 | 1 |
DC3000/delta hrp 24h | 1.48126 | 0.246 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.21315 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03395 | 1 |
Var 0h | 1.14155 | 0.936 |
Var 12h I row2-row1 | 1.00475 | |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 1.1373 | |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 0.98591 | |
Var 60h NI row2-row1 | 1.10807 | |
Time course 0hI-0hNI | 0.85021 | 1 |
Time course 12hI-12hNI | 0.89157 | 0.424 |
Time course 36hI-36hNI | 1.0435 | 0.881 |
Time course 60hI-60hNI | 1.5993 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04797 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.27944 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.91421 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08352 | 0.05 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83432 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82499 | 0.172 |
Manapal/WT (break) | 0.94385 | 1 |
Manapal/WT (red) | 1.39739 | 0.142 |
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