Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.3.4.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.42421	0.394
27DAP/17DAP	0.77138	0.37
39DAP/27DAP	1.09919	0.91
41DAP/39DAP	1.0861	0.624
42DAP/41DAP	1.0635	0.926
43DAP/42DAP	1.00917	0.937
47DAP/43DAP	1.20552	0.809
52DAP/47DAP	0.9838	0.865
57DAP/52DAP	1.12453	0.935

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.76467	0.054
17DAP/reference	1.00475	1
27DAP/reference	1.01013	0.885
39DAP/reference	1.05774	0.359
41DAP/reference	0.83216	0.018
42DAP/reference	0.88797	0.111
43DAP/reference	1.02225	0.982
47DAP/reference	0.99771	0.764
52DAP/reference	0.94374	0.31
57DAP/reference	0.89707	0.415

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.35062	0.045
27DAP/17DAP	0.93125	0.854
39DAP/27DAP	1.10898	0.758
41DAP/39DAP	1.24637	0.59
42DAP/41DAP	1.09093	0.571
43DAP/42DAP	0.9049	0.466
47DAP/43DAP	0.93773	0.656
52DAP/47DAP	1.02835	0.991
57DAP/52DAP	0.98039	0.768
57DAP/7DAP	1.11692	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04479	0.927
17DAP/reference	0.96836	0.447
27DAP/reference	1.03052	1
39DAP/reference	1.20725	0.048
41DAP/reference	1.24212	0.141
42DAP/reference	1.22063	0.046
43DAP/reference	0.96859	0.421
47DAP/reference	0.83629	0.383
52DAP/reference	1.05759	0.599
57DAP/reference	1.05925	0.468

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85041	0.374
17DAP/reference	0.79708	0.12
27DAP/reference	0.93727	0.381
39DAP/reference	1.30535	0.868
41DAP/reference	0.88016	0.183
42DAP/reference	0.81655	0.055
43DAP/reference	0.75342	0.023
47DAP/reference	0.83942	0.013
52DAP/reference	0.63116
57DAP/reference	1.53899	0.916

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96919	0.489
17DAP/reference	0.85657	0.358
27DAP/reference	0.96709	0.516
39DAP/reference	0.77883	0.222
41DAP/reference	0.87605	0.132
42DAP/reference	0.9414	0.445
43DAP/reference	0.95525	0.468
47DAP/reference	0.99788	0.687
52DAP/reference	0.96403	0.65
57DAP/reference	1.20779	0.095

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.28262	0.817
26DAP/20DAP	0.95852	1
34DAP/26DAP	0.88974	0.575
51DAP/34DAP	1.04418	0.925
52DAP/51DAP	0.83535	1
53DAP/52DAP	1.07502	0.935
55DAP/53DAP	1.45539	1
57DAP/55DAP	0.90596	0.647
62DAP/57DAP	0.62288	0.088
68DAP/62DAP	2.04183	0.635
68DAP/14DAP	1.32122	0.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.3791	0.045

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.95511	0.726
Mature Green Tomato/Ripe Tomato	0.65261	0.047
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.65769	0.293
Mature Eggplant/Ripe Tomato	0.2812	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.20978
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.19808	0.563
1-3/M82	N/A	N/A
2-1-1/M82	1.49986
2-1/M82	N/A	N/A
2-6/M82	0.97403
3-2/M82	1.49378
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	1.00307
4-3/M82	1.44579	1
5-3/M82	0.91874	1
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	0.9947
7-2/M82	1.02834
9-3-2/M82	0.96551

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	2.00538
IL12-4/WTpooled	0.86416
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	1.16794	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.99957	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.84136	0.849
DC3000/delta hrp 6h	1.44234	1
DC3000/delta hrp 12h	1.13333	1
DC3000/delta hrp 24h	0.91334	0.543

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.97005	1
Exp 36h	1.32715	0.693
Exp 60h	0.99367	0.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.01872	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	0.32918
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.98389	0.485
transgenic ySAMdc/azygous control (breaker)	1.0081	1
transgenic ySAMdc/azygous control (red)	1.02302	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.00073	1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.82908	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.87769	1
Manapal/WT (break)	0.91416	1
Manapal/WT (red)	1.11553	0.222