Expression of 1-1-6.3.4.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.424210.394
27DAP/17DAP0.771380.37
39DAP/27DAP1.099190.91
41DAP/39DAP1.08610.624
42DAP/41DAP1.06350.926
43DAP/42DAP1.009170.937
47DAP/43DAP1.205520.809
52DAP/47DAP0.98380.865
57DAP/52DAP1.124530.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.764670.054
17DAP/reference1.004751
27DAP/reference1.010130.885
39DAP/reference1.057740.359
41DAP/reference0.832160.018
42DAP/reference0.887970.111
43DAP/reference1.022250.982
47DAP/reference0.997710.764
52DAP/reference0.943740.31
57DAP/reference0.897070.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.350620.045
27DAP/17DAP0.931250.854
39DAP/27DAP1.108980.758
41DAP/39DAP1.246370.59
42DAP/41DAP1.090930.571
43DAP/42DAP0.90490.466
47DAP/43DAP0.937730.656
52DAP/47DAP1.028350.991
57DAP/52DAP0.980390.768
57DAP/7DAP1.116921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044790.927
17DAP/reference0.968360.447
27DAP/reference1.030521
39DAP/reference1.207250.048
41DAP/reference1.242120.141
42DAP/reference1.220630.046
43DAP/reference0.968590.421
47DAP/reference0.836290.383
52DAP/reference1.057590.599
57DAP/reference1.059250.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850410.374
17DAP/reference0.797080.12
27DAP/reference0.937270.381
39DAP/reference1.305350.868
41DAP/reference0.880160.183
42DAP/reference0.816550.055
43DAP/reference0.753420.023
47DAP/reference0.839420.013
52DAP/reference0.63116
57DAP/reference1.538990.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.969190.489
17DAP/reference0.856570.358
27DAP/reference0.967090.516
39DAP/reference0.778830.222
41DAP/reference0.876050.132
42DAP/reference0.94140.445
43DAP/reference0.955250.468
47DAP/reference0.997880.687
52DAP/reference0.964030.65
57DAP/reference1.207790.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.282620.817
26DAP/20DAP0.958521
34DAP/26DAP0.889740.575
51DAP/34DAP1.044180.925
52DAP/51DAP0.835351
53DAP/52DAP1.075020.935
55DAP/53DAP1.455391
57DAP/55DAP0.905960.647
62DAP/57DAP0.622880.088
68DAP/62DAP2.041830.635
68DAP/14DAP1.321220.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.37910.045

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.955110.726
Mature Green Tomato/Ripe Tomato0.652610.047
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.657690.293
Mature Eggplant/Ripe Tomato0.28120.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.20978
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.198080.563
1-3/M82N/AN/A
2-1-1/M821.49986
2-1/M82N/AN/A
2-6/M820.97403
3-2/M821.49378
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.00307
4-3/M821.445791
5-3/M820.918741
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.9947
7-2/M821.02834
9-3-2/M820.96551

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled2.00538
IL12-4/WTpooled0.86416
IL1-4/WTpooledN/AN/A
WT/WTpooled1.167941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.999571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.841360.849
DC3000/delta hrp 6h1.442341
DC3000/delta hrp 12h1.133331
DC3000/delta hrp 24h0.913340.543

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.970051
Exp 36h1.327150.693
Exp 60h0.993670.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.018721
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNI0.32918
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.983890.485
transgenic ySAMdc/azygous control (breaker)1.00811
transgenic ySAMdc/azygous control (red)1.023020.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000731

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.829080.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.877691
Manapal/WT (break)0.914161
Manapal/WT (red)1.115530.222