Expression of 1-1-6.3.6.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42591 | 0.336 |
27DAP/17DAP | 1.0235 | 1 |
39DAP/27DAP | 1.05637 | 1 |
41DAP/39DAP | 1.008 | 0.988 |
42DAP/41DAP | 1.09252 | 0.913 |
43DAP/42DAP | 0.97551 | 0.91 |
47DAP/43DAP | 1.06502 | 0.965 |
52DAP/47DAP | 1.10175 | 0.794 |
57DAP/52DAP | 1.12994 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8141 | 0.052 |
17DAP/reference | 0.7781 | 0.028 |
27DAP/reference | 0.92941 | 0.208 |
39DAP/reference | 0.98825 | 0.797 |
41DAP/reference | 0.85271 | 0.085 |
42DAP/reference | 1.02443 | 1 |
43DAP/reference | 1.11023 | 0.102 |
47DAP/reference | 1.04955 | 0.463 |
52DAP/reference | 1.08096 | 0.663 |
57DAP/reference | 1.30727 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3012 | 0.063 |
27DAP/17DAP | 0.95766 | 0.782 |
39DAP/27DAP | 1.0749 | 0.514 |
41DAP/39DAP | 1.25442 | 0.077 |
42DAP/41DAP | 0.96349 | 0.721 |
43DAP/42DAP | 0.71214 | 0.023 |
47DAP/43DAP | 1.00579 | 1 |
52DAP/47DAP | 1.10389 | 0.73 |
57DAP/52DAP | 0.92007 | 0.558 |
57DAP/7DAP | 1.24566 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97149 | 0.613 |
17DAP/reference | 1.0242 | 0.693 |
27DAP/reference | 0.87255 | 0.022 |
39DAP/reference | 1.21239 | 0.101 |
41DAP/reference | 1.15726 | 0.416 |
42DAP/reference | 1.05848 | 0.751 |
43DAP/reference | 1.13412 | 0.537 |
47DAP/reference | 1.30784 | 0.142 |
52DAP/reference | 1.02191 | 0.802 |
57DAP/reference | 1.28115 | 0.082 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8636 | 0.204 |
17DAP/reference | 0.91424 | 0.279 |
27DAP/reference | 1.0151 | 0.735 |
39DAP/reference | 0.95076 | 0.322 |
41DAP/reference | 0.99336 | 0.601 |
42DAP/reference | 1.0462 | 0.759 |
43DAP/reference | 0.79619 | 0.132 |
47DAP/reference | 1.11778 | 0.377 |
52DAP/reference | 0.89775 | 0.28 |
57DAP/reference | 1.04512 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27488 | 0.176 |
17DAP/reference | 1.00345 | 0.825 |
27DAP/reference | 1.02963 | 0.934 |
39DAP/reference | 0.94147 | 0.643 |
41DAP/reference | 1.33513 | 0.12 |
42DAP/reference | 1.21198 | 0.246 |
43DAP/reference | 1.27489 | 0.219 |
47DAP/reference | 1.07879 | 0.324 |
52DAP/reference | 1.06503 | 0.509 |
57DAP/reference | 1.31436 | 0.068 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89025 | 1 |
26DAP/20DAP | 0.84461 | 1 |
34DAP/26DAP | 1.04058 | 1 |
51DAP/34DAP | 1.28479 | 0.445 |
52DAP/51DAP | 1.09709 | 0.742 |
53DAP/52DAP | 1.01683 | 0.978 |
55DAP/53DAP | 1.07803 | 0.991 |
57DAP/55DAP | 0.47775 | |
62DAP/57DAP | 1.07492 | |
68DAP/62DAP | 1.64336 | 0.573 |
68DAP/14DAP | 1.93786 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.58117 | 0.326 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.46695 | |
Mature Green Tomato/Ripe Tomato | 1.28101 | 0.149 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.54015 | 1 |
Mature Eggplant/Ripe Tomato | 0.79754 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06613 | 0.877 |
1-1-2/M82 | 1.09533 | 1 |
12-2/M82 | 0.88229 | 0.955 |
12-4/M82 | 0.86277 | 0.358 |
1-3/M82 | 0.70428 | |
2-1-1/M82 | 1.01095 | 1 |
2-1/M82 | 1.05856 | |
2-6/M82 | 0.85255 | 1 |
3-2/M82 | 1.06913 | |
4-1-1/M82 | 1.27413 | 1 |
4-1/M82 | 1.44828 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.00362 | 1 |
5-3/M82 | 1.22769 | 0.572 |
6-2/M82 | 0.7583 | 0.444 |
6-3/M82 | 0.79232 | 1 |
7-1/M82 | 0.74531 | |
7-2/M82 | 1.21773 | 0.385 |
9-3-2/M82 | 0.78141 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02576 | |
IL2-6/WTpooled | 1.10037 | 0.788 |
IL7-5/WTpooled | 0.75615 | 1 |
IL7-3/WTpooled | 1.10117 | 1 |
IL12-4/WTpooled | 0.93568 | 1 |
IL1-4/WTpooled | 1.07381 | 1 |
WT/WTpooled | 0.8713 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09366 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.87148 | |
DC3000/delta hrp 6h | 0.68241 | 0.706 |
DC3000/delta hrp 12h | 1.08403 | 1 |
DC3000/delta hrp 24h | 0.80035 | 0.109 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.22987 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93249 | 0.328 |
Exp 36h | N/A | N/A |
Exp 60h | 1.01401 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03667 | 1 |
Var 0h | 0.57465 | 0.374 |
Var 12h I row2-row1 | 1.11032 | 0.506 |
Var 12h NI row2-row1 | 1.24888 | 1 |
Var 36h I row2-row1 | 1.04904 | 0.742 |
Var 36h NI row2-row1 | 2.22274 | 1 |
Var 60h I row2-row1 | 1.01353 | 1 |
Var 60h NI row2-row1 | 0.96632 | 1 |
Time course 0hI-0hNI | 1.00705 | 1 |
Time course 12hI-12hNI | 1.06303 | 0.572 |
Time course 36hI-36hNI | 1.45726 | 0.005 |
Time course 60hI-60hNI | 2.48235 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05043 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 0.8476 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.06547 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98556 | 0.459 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.90752 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97615 | 1 |
Manapal/WT (break) | 1.08613 | 1 |
Manapal/WT (red) | 1.13558 | 0.413 |
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