Expression of 1-1-6.3.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.425910.336
27DAP/17DAP1.02351
39DAP/27DAP1.056371
41DAP/39DAP1.0080.988
42DAP/41DAP1.092520.913
43DAP/42DAP0.975510.91
47DAP/43DAP1.065020.965
52DAP/47DAP1.101750.794
57DAP/52DAP1.129940.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.81410.052
17DAP/reference0.77810.028
27DAP/reference0.929410.208
39DAP/reference0.988250.797
41DAP/reference0.852710.085
42DAP/reference1.024431
43DAP/reference1.110230.102
47DAP/reference1.049550.463
52DAP/reference1.080960.663
57DAP/reference1.307270.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.30120.063
27DAP/17DAP0.957660.782
39DAP/27DAP1.07490.514
41DAP/39DAP1.254420.077
42DAP/41DAP0.963490.721
43DAP/42DAP0.712140.023
47DAP/43DAP1.005791
52DAP/47DAP1.103890.73
57DAP/52DAP0.920070.558
57DAP/7DAP1.245661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.971490.613
17DAP/reference1.02420.693
27DAP/reference0.872550.022
39DAP/reference1.212390.101
41DAP/reference1.157260.416
42DAP/reference1.058480.751
43DAP/reference1.134120.537
47DAP/reference1.307840.142
52DAP/reference1.021910.802
57DAP/reference1.281150.082

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.86360.204
17DAP/reference0.914240.279
27DAP/reference1.01510.735
39DAP/reference0.950760.322
41DAP/reference0.993360.601
42DAP/reference1.04620.759
43DAP/reference0.796190.132
47DAP/reference1.117780.377
52DAP/reference0.897750.28
57DAP/reference1.045121

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.274880.176
17DAP/reference1.003450.825
27DAP/reference1.029630.934
39DAP/reference0.941470.643
41DAP/reference1.335130.12
42DAP/reference1.211980.246
43DAP/reference1.274890.219
47DAP/reference1.078790.324
52DAP/reference1.065030.509
57DAP/reference1.314360.068

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.890251
26DAP/20DAP0.844611
34DAP/26DAP1.040581
51DAP/34DAP1.284790.445
52DAP/51DAP1.097090.742
53DAP/52DAP1.016830.978
55DAP/53DAP1.078030.991
57DAP/55DAP0.47775
62DAP/57DAP1.07492
68DAP/62DAP1.643360.573
68DAP/14DAP1.937860.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.581170.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.46695
Mature Green Tomato/Ripe Tomato1.281010.149
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.540151
Mature Eggplant/Ripe Tomato0.797541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.066130.877
1-1-2/M821.095331
12-2/M820.882290.955
12-4/M820.862770.358
1-3/M820.70428
2-1-1/M821.010951
2-1/M821.05856
2-6/M820.852551
3-2/M821.06913
4-1-1/M821.274131
4-1/M821.44828
4-3-2/M82N/AN/A
4-3/M821.003621
5-3/M821.227690.572
6-2/M820.75830.444
6-3/M820.792321
7-1/M820.74531
7-2/M821.217730.385
9-3-2/M820.78141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.02576
IL2-6/WTpooled1.100370.788
IL7-5/WTpooled0.756151
IL7-3/WTpooled1.101171
IL12-4/WTpooled0.935681
IL1-4/WTpooled1.073811
WT/WTpooled0.87131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.093660.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.87148
DC3000/delta hrp 6h0.682410.706
DC3000/delta hrp 12h1.084031
DC3000/delta hrp 24h0.800350.109

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.22987

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.932490.328
Exp 36hN/AN/A
Exp 60h1.014011

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.036671
Var 0h0.574650.374
Var 12h I row2-row11.110320.506
Var 12h NI row2-row11.248881
Var 36h I row2-row11.049040.742
Var 36h NI row2-row12.222741
Var 60h I row2-row11.013531
Var 60h NI row2-row10.966321
Time course 0hI-0hNI1.007051
Time course 12hI-12hNI1.063030.572
Time course 36hI-36hNI1.457260.005
Time course 60hI-60hNI2.482350.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.050430.294
transgenic ySAMdc/azygous control (breaker)0.84760.15
transgenic ySAMdc/azygous control (red)1.065470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.985560.459

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.907520.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.976151
Manapal/WT (break)1.086131
Manapal/WT (red)1.135580.413