Expression of 1-1-6.3.6.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.076040.739
27DAP/17DAP1.11890.849
39DAP/27DAP0.958450.663
41DAP/39DAP0.956850.819
42DAP/41DAP0.935661
43DAP/42DAP1.133920.861
47DAP/43DAP1.090590.609
52DAP/47DAP0.863160.622
57DAP/52DAP1.043860.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.906850.08
17DAP/reference0.969280.419
27DAP/reference1.05830.509
39DAP/reference1.023060.504
41DAP/reference1.038450.91
42DAP/reference1.013290.995
43DAP/reference1.040850.403
47DAP/reference0.996690.636
52DAP/reference0.999030.73
57DAP/reference1.006341

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.199390.055
27DAP/17DAP0.922630.58
39DAP/27DAP1.026220.707
41DAP/39DAP0.977340.968
42DAP/41DAP0.982740.784
43DAP/42DAP0.996331
47DAP/43DAP0.986630.923
52DAP/47DAP0.998940.982
57DAP/52DAP0.989620.81
57DAP/7DAP0.971371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00671
17DAP/reference0.836340.031
27DAP/reference0.832140.026
39DAP/reference1.020070.909
41DAP/reference0.837850.037
42DAP/reference0.772890.011
43DAP/reference0.62340.012
47DAP/reference0.869060.293
52DAP/reference0.707760.012
57DAP/reference0.765260.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954820.592
17DAP/reference0.897730.038
27DAP/reference0.949520.292
39DAP/reference0.953820.274
41DAP/reference0.930070.145
42DAP/reference0.822390.011
43DAP/reference0.909390.206
47DAP/reference0.875910.01
52DAP/reference0.936560.037
57DAP/reference1.027480.755

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972550.526
17DAP/reference0.984010.668
27DAP/reference0.930120.195
39DAP/reference0.909670.05
41DAP/reference0.916620.148
42DAP/reference0.781970.036
43DAP/reference0.815180.052
47DAP/reference1.063270.228
52DAP/reference0.690920.155
57DAP/reference1.035540.786

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.061440.966
26DAP/20DAP0.962841
34DAP/26DAP0.991311
51DAP/34DAP0.990060.901
52DAP/51DAP0.945541
53DAP/52DAP1.055550.83
55DAP/53DAP0.907770.5
57DAP/55DAP1.092330.682
62DAP/57DAP1.204810.445
68DAP/62DAP1.223960.059
68DAP/14DAP1.210950.084

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.890330.076

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.210890.176
Mature Green Tomato/Ripe Tomato1.431020.478
Immature Eggplant/Mature Eggplant1.147210.142
Ripe Pepper/Ripe Tomato2.89861
Mature Eggplant/Ripe Tomato7.331620.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.100960.591
1-1-2/M820.982690.958
12-2/M821.045121
12-4/M820.966881
1-3/M820.897270.501
2-1-1/M820.86830.465
2-1/M821.12891
2-6/M820.957191
3-2/M820.951021
4-1-1/M821.038891
4-1/M820.881820.737
4-3-2/M820.924020.698
4-3/M820.950590.72
5-3/M821.037341
6-2/M821.090821
6-3/M820.97572
7-1/M821.034691
7-2/M820.952530.881
9-3-2/M820.854221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.98127
IL2-6/WTpooled1.171710.531
IL7-5/WTpooled1.11702
IL7-3/WTpooled0.890510.294
IL12-4/WTpooled1.014381
IL1-4/WTpooled0.977431
WT/WTpooled1.075080.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.07031

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.001831
DC3000/delta hrp 6h1.139641
DC3000/delta hrp 12h0.984671
DC3000/delta hrp 24h0.93680.585

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.534310.026
DC3000 delta B/DC3000 delta AB0.646390.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.981751
Exp 36h1.074681
Exp 60h1.026741

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996061
Var 0h0.527181
Var 12h I row2-row11.025021
Var 12h NI row2-row11.025531
Var 36h I row2-row11.072670.908
Var 36h NI row2-row11.106940.482
Var 60h I row2-row11.22430.562
Var 60h NI row2-row11.160350.904
Time course 0hI-0hNI0.967240.807
Time course 12hI-12hNI1.037490.779
Time course 36hI-36hNI1.014560.826
Time course 60hI-60hNI0.225560.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.104390.278
transgenic ySAMdc/azygous control (breaker)1.218280.165
transgenic ySAMdc/azygous control (red)0.960751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027560.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.302850.086
Manapal/WT (break)1.937920.183
Manapal/WT (red)2.647770.134