Expression of 1-1-6.3.6.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07604 | 0.739 |
27DAP/17DAP | 1.1189 | 0.849 |
39DAP/27DAP | 0.95845 | 0.663 |
41DAP/39DAP | 0.95685 | 0.819 |
42DAP/41DAP | 0.93566 | 1 |
43DAP/42DAP | 1.13392 | 0.861 |
47DAP/43DAP | 1.09059 | 0.609 |
52DAP/47DAP | 0.86316 | 0.622 |
57DAP/52DAP | 1.04386 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90685 | 0.08 |
17DAP/reference | 0.96928 | 0.419 |
27DAP/reference | 1.0583 | 0.509 |
39DAP/reference | 1.02306 | 0.504 |
41DAP/reference | 1.03845 | 0.91 |
42DAP/reference | 1.01329 | 0.995 |
43DAP/reference | 1.04085 | 0.403 |
47DAP/reference | 0.99669 | 0.636 |
52DAP/reference | 0.99903 | 0.73 |
57DAP/reference | 1.00634 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19939 | 0.055 |
27DAP/17DAP | 0.92263 | 0.58 |
39DAP/27DAP | 1.02622 | 0.707 |
41DAP/39DAP | 0.97734 | 0.968 |
42DAP/41DAP | 0.98274 | 0.784 |
43DAP/42DAP | 0.99633 | 1 |
47DAP/43DAP | 0.98663 | 0.923 |
52DAP/47DAP | 0.99894 | 0.982 |
57DAP/52DAP | 0.98962 | 0.81 |
57DAP/7DAP | 0.97137 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0067 | 1 |
17DAP/reference | 0.83634 | 0.031 |
27DAP/reference | 0.83214 | 0.026 |
39DAP/reference | 1.02007 | 0.909 |
41DAP/reference | 0.83785 | 0.037 |
42DAP/reference | 0.77289 | 0.011 |
43DAP/reference | 0.6234 | 0.012 |
47DAP/reference | 0.86906 | 0.293 |
52DAP/reference | 0.70776 | 0.012 |
57DAP/reference | 0.76526 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95482 | 0.592 |
17DAP/reference | 0.89773 | 0.038 |
27DAP/reference | 0.94952 | 0.292 |
39DAP/reference | 0.95382 | 0.274 |
41DAP/reference | 0.93007 | 0.145 |
42DAP/reference | 0.82239 | 0.011 |
43DAP/reference | 0.90939 | 0.206 |
47DAP/reference | 0.87591 | 0.01 |
52DAP/reference | 0.93656 | 0.037 |
57DAP/reference | 1.02748 | 0.755 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97255 | 0.526 |
17DAP/reference | 0.98401 | 0.668 |
27DAP/reference | 0.93012 | 0.195 |
39DAP/reference | 0.90967 | 0.05 |
41DAP/reference | 0.91662 | 0.148 |
42DAP/reference | 0.78197 | 0.036 |
43DAP/reference | 0.81518 | 0.052 |
47DAP/reference | 1.06327 | 0.228 |
52DAP/reference | 0.69092 | 0.155 |
57DAP/reference | 1.03554 | 0.786 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06144 | 0.966 |
26DAP/20DAP | 0.96284 | 1 |
34DAP/26DAP | 0.99131 | 1 |
51DAP/34DAP | 0.99006 | 0.901 |
52DAP/51DAP | 0.94554 | 1 |
53DAP/52DAP | 1.05555 | 0.83 |
55DAP/53DAP | 0.90777 | 0.5 |
57DAP/55DAP | 1.09233 | 0.682 |
62DAP/57DAP | 1.20481 | 0.445 |
68DAP/62DAP | 1.22396 | 0.059 |
68DAP/14DAP | 1.21095 | 0.084 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89033 | 0.076 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21089 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.43102 | 0.478 |
Immature Eggplant/Mature Eggplant | 1.14721 | 0.142 |
Ripe Pepper/Ripe Tomato | 2.8986 | 1 |
Mature Eggplant/Ripe Tomato | 7.33162 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10096 | 0.591 |
1-1-2/M82 | 0.98269 | 0.958 |
12-2/M82 | 1.04512 | 1 |
12-4/M82 | 0.96688 | 1 |
1-3/M82 | 0.89727 | 0.501 |
2-1-1/M82 | 0.8683 | 0.465 |
2-1/M82 | 1.1289 | 1 |
2-6/M82 | 0.95719 | 1 |
3-2/M82 | 0.95102 | 1 |
4-1-1/M82 | 1.03889 | 1 |
4-1/M82 | 0.88182 | 0.737 |
4-3-2/M82 | 0.92402 | 0.698 |
4-3/M82 | 0.95059 | 0.72 |
5-3/M82 | 1.03734 | 1 |
6-2/M82 | 1.09082 | 1 |
6-3/M82 | 0.97572 | |
7-1/M82 | 1.03469 | 1 |
7-2/M82 | 0.95253 | 0.881 |
9-3-2/M82 | 0.85422 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98127 | |
IL2-6/WTpooled | 1.17171 | 0.531 |
IL7-5/WTpooled | 1.11702 | |
IL7-3/WTpooled | 0.89051 | 0.294 |
IL12-4/WTpooled | 1.01438 | 1 |
IL1-4/WTpooled | 0.97743 | 1 |
WT/WTpooled | 1.07508 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0703 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00183 | 1 |
DC3000/delta hrp 6h | 1.13964 | 1 |
DC3000/delta hrp 12h | 0.98467 | 1 |
DC3000/delta hrp 24h | 0.9368 | 0.585 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.53431 | 0.026 |
DC3000 delta B/DC3000 delta AB | 0.64639 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98175 | 1 |
Exp 36h | 1.07468 | 1 |
Exp 60h | 1.02674 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99606 | 1 |
Var 0h | 0.52718 | 1 |
Var 12h I row2-row1 | 1.02502 | 1 |
Var 12h NI row2-row1 | 1.02553 | 1 |
Var 36h I row2-row1 | 1.07267 | 0.908 |
Var 36h NI row2-row1 | 1.10694 | 0.482 |
Var 60h I row2-row1 | 1.2243 | 0.562 |
Var 60h NI row2-row1 | 1.16035 | 0.904 |
Time course 0hI-0hNI | 0.96724 | 0.807 |
Time course 12hI-12hNI | 1.03749 | 0.779 |
Time course 36hI-36hNI | 1.01456 | 0.826 |
Time course 60hI-60hNI | 0.22556 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10439 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 1.21828 | 0.165 |
transgenic ySAMdc/azygous control (red) | 0.96075 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02756 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.30285 | 0.086 |
Manapal/WT (break) | 1.93792 | 0.183 |
Manapal/WT (red) | 2.64777 | 0.134 |
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