Expression of 1-1-6.3.8.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.783040.324
27DAP/17DAP1.070441
39DAP/27DAP1.253140.575
41DAP/39DAP1.239870.814
42DAP/41DAP1.804890.136
43DAP/42DAP1.40240.512
47DAP/43DAP1.197960.442
52DAP/47DAP0.893750.678
57DAP/52DAP1.310160.764

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.836660.172
17DAP/reference0.928220.474
27DAP/reference0.937380.457
39DAP/reference0.903670.292
41DAP/reference0.698620.013
42DAP/reference0.858570.111
43DAP/reference0.97140.675
47DAP/reference0.96660.366
52DAP/reference0.954860.427
57DAP/reference1.326510.07

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.572590.039
27DAP/17DAP1.30670.393
39DAP/27DAP1.062320.824
41DAP/39DAP0.923470.713
42DAP/41DAP1.301380.708
43DAP/42DAP1.433830.027
47DAP/43DAP1.046410.957
52DAP/47DAP1.193330.46
57DAP/52DAP0.926780.467
57DAP/7DAP1.670680.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.313480.042
17DAP/reference1.02561
27DAP/reference1.130230.974
39DAP/reference0.958890.095
41DAP/reference0.953240.394
42DAP/reference0.981240.531
43DAP/reference0.932810.252
47DAP/reference1.005311
52DAP/reference1.012950.802
57DAP/reference0.85070.09

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895240.412
17DAP/reference0.63860.01
27DAP/reference0.886050.292
39DAP/reference0.818950.034
41DAP/reference0.914540.137
42DAP/reference0.889870.15
43DAP/reference1.247910.831
47DAP/reference0.891470.097
52DAP/reference0.942580.351
57DAP/reference0.696370.026

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94320.526
17DAP/reference0.928820.381
27DAP/reference1.166040.081
39DAP/reference0.934990.271
41DAP/reference1.017781
42DAP/reference0.824740.134
43DAP/reference1.014691
47DAP/reference0.913170.325
52DAP/reference0.751120.139
57DAP/reference0.927070.321

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.948831
26DAP/20DAP0.84540.512
34DAP/26DAP0.856280.404
51DAP/34DAP1.117830.978
52DAP/51DAP0.918511
53DAP/52DAP1.016331
55DAP/53DAP0.934970.709
57DAP/55DAP1.25910.944
62DAP/57DAP0.798370.871
68DAP/62DAP1.27810.582
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.950680.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.295220.03
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.078681
12-2/M82N/AN/A
12-4/M821.424631
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.41776
4-3-2/M821.726
4-3/M820.516260.611
5-3/M820.981191
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.13271

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.98621
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.091471
IL1-4/WTpooled0.90450.834
WT/WTpooled1.094410.805

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.979451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.919011
DC3000/delta hrp 6h1.49321
DC3000/delta hrp 12h0.937831
DC3000/delta hrp 24h0.821790.379

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.58177
DC3000 delta B/DC3000 delta AB0.50610.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.053871
Var 0h0.971640.933
Var 12h I row2-row10.869940.627
Var 12h NI row2-row10.885150.546
Var 36h I row2-row11.21841
Var 36h NI row2-row11.229851
Var 60h I row2-row11.097340.562
Var 60h NI row2-row10.962011
Time course 0hI-0hNI1.091380.852
Time course 12hI-12hNI1.051340.738
Time course 36hI-36hNI0.79820.024
Time course 60hI-60hNI0.323540.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.692530.248
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.984560.552

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.940570.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.227410.413