Expression of 1-1-6.3.8.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78304 | 0.324 |
27DAP/17DAP | 1.07044 | 1 |
39DAP/27DAP | 1.25314 | 0.575 |
41DAP/39DAP | 1.23987 | 0.814 |
42DAP/41DAP | 1.80489 | 0.136 |
43DAP/42DAP | 1.4024 | 0.512 |
47DAP/43DAP | 1.19796 | 0.442 |
52DAP/47DAP | 0.89375 | 0.678 |
57DAP/52DAP | 1.31016 | 0.764 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83666 | 0.172 |
17DAP/reference | 0.92822 | 0.474 |
27DAP/reference | 0.93738 | 0.457 |
39DAP/reference | 0.90367 | 0.292 |
41DAP/reference | 0.69862 | 0.013 |
42DAP/reference | 0.85857 | 0.111 |
43DAP/reference | 0.9714 | 0.675 |
47DAP/reference | 0.9666 | 0.366 |
52DAP/reference | 0.95486 | 0.427 |
57DAP/reference | 1.32651 | 0.07 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.57259 | 0.039 |
27DAP/17DAP | 1.3067 | 0.393 |
39DAP/27DAP | 1.06232 | 0.824 |
41DAP/39DAP | 0.92347 | 0.713 |
42DAP/41DAP | 1.30138 | 0.708 |
43DAP/42DAP | 1.43383 | 0.027 |
47DAP/43DAP | 1.04641 | 0.957 |
52DAP/47DAP | 1.19333 | 0.46 |
57DAP/52DAP | 0.92678 | 0.467 |
57DAP/7DAP | 1.67068 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31348 | 0.042 |
17DAP/reference | 1.0256 | 1 |
27DAP/reference | 1.13023 | 0.974 |
39DAP/reference | 0.95889 | 0.095 |
41DAP/reference | 0.95324 | 0.394 |
42DAP/reference | 0.98124 | 0.531 |
43DAP/reference | 0.93281 | 0.252 |
47DAP/reference | 1.00531 | 1 |
52DAP/reference | 1.01295 | 0.802 |
57DAP/reference | 0.8507 | 0.09 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89524 | 0.412 |
17DAP/reference | 0.6386 | 0.01 |
27DAP/reference | 0.88605 | 0.292 |
39DAP/reference | 0.81895 | 0.034 |
41DAP/reference | 0.91454 | 0.137 |
42DAP/reference | 0.88987 | 0.15 |
43DAP/reference | 1.24791 | 0.831 |
47DAP/reference | 0.89147 | 0.097 |
52DAP/reference | 0.94258 | 0.351 |
57DAP/reference | 0.69637 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9432 | 0.526 |
17DAP/reference | 0.92882 | 0.381 |
27DAP/reference | 1.16604 | 0.081 |
39DAP/reference | 0.93499 | 0.271 |
41DAP/reference | 1.01778 | 1 |
42DAP/reference | 0.82474 | 0.134 |
43DAP/reference | 1.01469 | 1 |
47DAP/reference | 0.91317 | 0.325 |
52DAP/reference | 0.75112 | 0.139 |
57DAP/reference | 0.92707 | 0.321 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94883 | 1 |
26DAP/20DAP | 0.8454 | 0.512 |
34DAP/26DAP | 0.85628 | 0.404 |
51DAP/34DAP | 1.11783 | 0.978 |
52DAP/51DAP | 0.91851 | 1 |
53DAP/52DAP | 1.01633 | 1 |
55DAP/53DAP | 0.93497 | 0.709 |
57DAP/55DAP | 1.2591 | 0.944 |
62DAP/57DAP | 0.79837 | 0.871 |
68DAP/62DAP | 1.2781 | 0.582 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95068 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.29522 | 0.03 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.07868 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.42463 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.41776 | |
4-3-2/M82 | 1.726 | |
4-3/M82 | 0.51626 | 0.611 |
5-3/M82 | 0.98119 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.13271 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9862 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.09147 | 1 |
IL1-4/WTpooled | 0.9045 | 0.834 |
WT/WTpooled | 1.09441 | 0.805 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97945 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91901 | 1 |
DC3000/delta hrp 6h | 1.49321 | |
DC3000/delta hrp 12h | 0.93783 | 1 |
DC3000/delta hrp 24h | 0.82179 | 0.379 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.58177 | |
DC3000 delta B/DC3000 delta AB | 0.5061 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05387 | 1 |
Var 0h | 0.97164 | 0.933 |
Var 12h I row2-row1 | 0.86994 | 0.627 |
Var 12h NI row2-row1 | 0.88515 | 0.546 |
Var 36h I row2-row1 | 1.2184 | 1 |
Var 36h NI row2-row1 | 1.22985 | 1 |
Var 60h I row2-row1 | 1.09734 | 0.562 |
Var 60h NI row2-row1 | 0.96201 | 1 |
Time course 0hI-0hNI | 1.09138 | 0.852 |
Time course 12hI-12hNI | 1.05134 | 0.738 |
Time course 36hI-36hNI | 0.7982 | 0.024 |
Time course 60hI-60hNI | 0.32354 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.69253 | 0.248 |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98456 | 0.552 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.94057 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.22741 | 0.413 |
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