Expression of 1-1-6.3.9.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.065810.977
27DAP/17DAP1.016781
39DAP/27DAP0.654890.326
41DAP/39DAP0.990670.925
42DAP/41DAP1.628260.644
43DAP/42DAP1.676060.816
47DAP/43DAP1.406410.647
52DAP/47DAP1.813520.772
57DAP/52DAP1.649220.873

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.44510.872
17DAP/reference0.576390.147
27DAP/reference0.664290.129
39DAP/reference0.803280.446
41DAP/reference1.46001
42DAP/reference1.034271
43DAP/referenceN/AN/A
47DAP/reference0.799950.071
52DAP/referenceN/AN/A
57DAP/reference1.815290.724

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.707760.26
27DAP/17DAP0.66828
39DAP/27DAP0.960420.833
41DAP/39DAP1.13735
42DAP/41DAP1.532290.783
43DAP/42DAPN/AN/A
47DAP/43DAP1.83264
52DAP/47DAP1.17475
57DAP/52DAPN/AN/A
57DAP/7DAP0.7245

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.88396
17DAP/referenceN/AN/A
27DAP/reference0.750780.303
39DAP/reference1.433220.819
41DAP/reference0.55422
42DAP/reference1.91752
43DAP/referenceN/AN/A
47DAP/reference2.50967
52DAP/reference2.077420.012
57DAP/reference1.06601

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.706950.105
17DAP/reference1.163490.874
27DAP/reference0.644460.111
39DAP/reference0.914980.306
41DAP/reference0.98890.557
42DAP/reference0.754770.169
43DAP/reference0.690630.092
47DAP/reference0.805050.049
52DAP/reference0.8430.143
57DAP/reference0.902210.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.96064
27DAP/reference1.308110.777
39DAP/referenceN/AN/A
41DAP/reference0.69679
42DAP/reference1.122620.22
43DAP/reference1.41399
47DAP/reference1.0663
52DAP/referenceN/AN/A
57DAP/reference0.75135

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.915311
26DAP/20DAP1.297480.558
34DAP/26DAP1.264970.819
51DAP/34DAP0.93277
52DAP/51DAP1.493430.848
53DAP/52DAP1.22265
55DAP/53DAPN/AN/A
57DAP/55DAPN/AN/A
62DAP/57DAP0.919330.994
68DAP/62DAP0.67944
68DAP/14DAP0.61437

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.734090.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.46202
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.161081
IL2-6/WTpooled0.978051
IL7-5/WTpooled0.83331
IL7-3/WTpooled1.385531
IL12-4/WTpooled0.883791
IL1-4/WTpooled1.326821
WT/WTpooled0.979941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.97248
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.085750.223
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.99211

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A