Expression of 1-1-6.3.9.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.51827 | 0.02 |
27DAP/17DAP | 0.5532 | 0.027 |
39DAP/27DAP | 0.90775 | 0.608 |
41DAP/39DAP | 1.07829 | 0.814 |
42DAP/41DAP | 1.06601 | 0.974 |
43DAP/42DAP | 0.94669 | 0.801 |
47DAP/43DAP | 0.88275 | 0.613 |
52DAP/47DAP | 1.31545 | 0.407 |
57DAP/52DAP | 0.97758 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53325 | 0.041 |
17DAP/reference | 1.08883 | 0.21 |
27DAP/reference | 1.07445 | 0.548 |
39DAP/reference | 0.92263 | 0.07 |
41DAP/reference | 0.86809 | 0.114 |
42DAP/reference | 0.87606 | 0.004 |
43DAP/reference | 0.93022 | 0.17 |
47DAP/reference | 0.79351 | 0.001 |
52DAP/reference | 0.71554 | 0.019 |
57DAP/reference | 0.78413 | 0.026 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.60037 | 0.034 |
27DAP/17DAP | 1.27203 | 0.094 |
39DAP/27DAP | 0.76186 | 0.055 |
41DAP/39DAP | 0.70196 | 0.013 |
42DAP/41DAP | 1.05086 | 0.783 |
43DAP/42DAP | 0.97407 | 0.774 |
47DAP/43DAP | 0.96588 | 0.796 |
52DAP/47DAP | 1.12249 | 0.669 |
57DAP/52DAP | 1.00555 | 1 |
57DAP/7DAP | 0.83347 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42867 | 0.06 |
17DAP/reference | 1.0625 | 0.269 |
27DAP/reference | 0.95745 | 0.101 |
39DAP/reference | 0.93481 | 0.031 |
41DAP/reference | 0.85836 | 0.012 |
42DAP/reference | 0.96419 | 0.222 |
43DAP/reference | 0.89792 | 0.035 |
47DAP/reference | 0.75034 | 0.05 |
52DAP/reference | 0.89623 | 0.014 |
57DAP/reference | 0.84998 | 0.021 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42822 | 0.068 |
17DAP/reference | 1.21796 | 0.036 |
27DAP/reference | 1.02723 | 0.79 |
39DAP/reference | 0.71447 | 0.014 |
41DAP/reference | 0.76342 | 0.033 |
42DAP/reference | 0.89425 | 0.135 |
43DAP/reference | 0.82381 | 0.162 |
47DAP/reference | 0.84295 | 0.038 |
52DAP/reference | 0.77084 | 0.005 |
57DAP/reference | 0.86252 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56351 | 0.017 |
17DAP/reference | 1.33732 | 0.072 |
27DAP/reference | 1.28095 | 0.042 |
39DAP/reference | 0.95307 | 0.199 |
41DAP/reference | 0.91242 | 0.185 |
42DAP/reference | 0.82498 | 0.059 |
43DAP/reference | 0.85094 | 0.064 |
47DAP/reference | 0.72483 | 0.024 |
52DAP/reference | 0.77617 | 0.07 |
57DAP/reference | 0.58358 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93591 | 1 |
26DAP/20DAP | 1.21054 | 0.558 |
34DAP/26DAP | 0.74442 | 0.21 |
51DAP/34DAP | 0.7354 | 0.061 |
52DAP/51DAP | 1.06872 | 0.42 |
53DAP/52DAP | 0.94942 | 0.848 |
55DAP/53DAP | 1.02318 | 0.938 |
57DAP/55DAP | 0.8848 | 0.556 |
62DAP/57DAP | 0.97807 | 0.994 |
68DAP/62DAP | 0.84947 | 0.345 |
68DAP/14DAP | 0.97177 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.61388 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.28991 | 0.059 |
Mature Green Tomato/Ripe Tomato | 2.86465 | 0.058 |
Immature Eggplant/Mature Eggplant | 0.38416 | 0.062 |
Ripe Pepper/Ripe Tomato | 27.1945 | 0.256 |
Mature Eggplant/Ripe Tomato | 43.4114 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90803 | |
1-1-2/M82 | 0.80433 | 0.761 |
12-2/M82 | 0.93903 | |
12-4/M82 | 0.95672 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.11441 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00008 | 1 |
3-2/M82 | 0.97851 | |
4-1-1/M82 | 1.0346 | 1 |
4-1/M82 | 0.84345 | 1 |
4-3-2/M82 | 0.96836 | 1 |
4-3/M82 | 0.78627 | |
5-3/M82 | 1.01923 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.95985 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.9898 | |
9-3-2/M82 | 0.78336 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86284 | 1 |
IL2-6/WTpooled | 0.84357 | 0.473 |
IL7-5/WTpooled | 1.26981 | 0.554 |
IL7-3/WTpooled | 0.92757 | 1 |
IL12-4/WTpooled | 1.08919 | 0.737 |
IL1-4/WTpooled | 0.91682 | 0.834 |
WT/WTpooled | 0.97943 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95758 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82636 | 1 |
DC3000/delta hrp 6h | 0.82116 | 0.95 |
DC3000/delta hrp 12h | 1.09104 | 1 |
DC3000/delta hrp 24h | 0.64065 | 0.1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.61523 | 0.075 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9023 | 1 |
Exp 36h | 0.85784 | 0.504 |
Exp 60h | 0.7267 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00651 | 1 |
Var 0h | 1.23054 | 0.782 |
Var 12h I row2-row1 | 0.91051 | 0.467 |
Var 12h NI row2-row1 | 0.93581 | 0.713 |
Var 36h I row2-row1 | 1.03126 | 1 |
Var 36h NI row2-row1 | 1.10683 | 1 |
Var 60h I row2-row1 | 1.17659 | 0.562 |
Var 60h NI row2-row1 | 1.08428 | 0.904 |
Time course 0hI-0hNI | 1.0521 | 0.799 |
Time course 12hI-12hNI | 1.03733 | 0.746 |
Time course 36hI-36hNI | 0.9375 | 0.198 |
Time course 60hI-60hNI | 0.4461 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.71572 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 2.53038 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.98444 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87676 | 0.097 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 6.65945 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.3743 | 0.14 |
Manapal/WT (break) | 1.41556 | 1 |
Manapal/WT (red) | N/A | N/A |
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