Expression of 1-1-6.3.9.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.518270.02
27DAP/17DAP0.55320.027
39DAP/27DAP0.907750.608
41DAP/39DAP1.078290.814
42DAP/41DAP1.066010.974
43DAP/42DAP0.946690.801
47DAP/43DAP0.882750.613
52DAP/47DAP1.315450.407
57DAP/52DAP0.977580.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.533250.041
17DAP/reference1.088830.21
27DAP/reference1.074450.548
39DAP/reference0.922630.07
41DAP/reference0.868090.114
42DAP/reference0.876060.004
43DAP/reference0.930220.17
47DAP/reference0.793510.001
52DAP/reference0.715540.019
57DAP/reference0.784130.026

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.600370.034
27DAP/17DAP1.272030.094
39DAP/27DAP0.761860.055
41DAP/39DAP0.701960.013
42DAP/41DAP1.050860.783
43DAP/42DAP0.974070.774
47DAP/43DAP0.965880.796
52DAP/47DAP1.122490.669
57DAP/52DAP1.005551
57DAP/7DAP0.833470.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.428670.06
17DAP/reference1.06250.269
27DAP/reference0.957450.101
39DAP/reference0.934810.031
41DAP/reference0.858360.012
42DAP/reference0.964190.222
43DAP/reference0.897920.035
47DAP/reference0.750340.05
52DAP/reference0.896230.014
57DAP/reference0.849980.021

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.428220.068
17DAP/reference1.217960.036
27DAP/reference1.027230.79
39DAP/reference0.714470.014
41DAP/reference0.763420.033
42DAP/reference0.894250.135
43DAP/reference0.823810.162
47DAP/reference0.842950.038
52DAP/reference0.770840.005
57DAP/reference0.862520.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.563510.017
17DAP/reference1.337320.072
27DAP/reference1.280950.042
39DAP/reference0.953070.199
41DAP/reference0.912420.185
42DAP/reference0.824980.059
43DAP/reference0.850940.064
47DAP/reference0.724830.024
52DAP/reference0.776170.07
57DAP/reference0.583580.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.935911
26DAP/20DAP1.210540.558
34DAP/26DAP0.744420.21
51DAP/34DAP0.73540.061
52DAP/51DAP1.068720.42
53DAP/52DAP0.949420.848
55DAP/53DAP1.023180.938
57DAP/55DAP0.88480.556
62DAP/57DAP0.978070.994
68DAP/62DAP0.849470.345
68DAP/14DAP0.971771

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.613880.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.289910.059
Mature Green Tomato/Ripe Tomato2.864650.058
Immature Eggplant/Mature Eggplant0.384160.062
Ripe Pepper/Ripe Tomato27.19450.256
Mature Eggplant/Ripe Tomato43.41140.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.90803
1-1-2/M820.804330.761
12-2/M820.93903
12-4/M820.956721
1-3/M82N/AN/A
2-1-1/M821.11441
2-1/M82N/AN/A
2-6/M821.000081
3-2/M820.97851
4-1-1/M821.03461
4-1/M820.843451
4-3-2/M820.968361
4-3/M820.78627
5-3/M821.019231
6-2/M82N/AN/A
6-3/M820.95985
7-1/M82N/AN/A
7-2/M820.9898
9-3-2/M820.783360.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.862841
IL2-6/WTpooled0.843570.473
IL7-5/WTpooled1.269810.554
IL7-3/WTpooled0.927571
IL12-4/WTpooled1.089190.737
IL1-4/WTpooled0.916820.834
WT/WTpooled0.979431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.957580.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.826361
DC3000/delta hrp 6h0.821160.95
DC3000/delta hrp 12h1.091041
DC3000/delta hrp 24h0.640650.1

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.615230.075

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.90231
Exp 36h0.857840.504
Exp 60h0.72670.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006511
Var 0h1.230540.782
Var 12h I row2-row10.910510.467
Var 12h NI row2-row10.935810.713
Var 36h I row2-row11.031261
Var 36h NI row2-row11.106831
Var 60h I row2-row11.176590.562
Var 60h NI row2-row11.084280.904
Time course 0hI-0hNI1.05210.799
Time course 12hI-12hNI1.037330.746
Time course 36hI-36hNI0.93750.198
Time course 60hI-60hNI0.44610.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.715720.314
transgenic ySAMdc/azygous control (breaker)2.530380.248
transgenic ySAMdc/azygous control (red)0.984441

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.876760.097

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt6.659450.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.37430.14
Manapal/WT (break)1.415561
Manapal/WT (red)N/AN/A