Expression of 1-1-6.3.9.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89016 | 0.486 |
27DAP/17DAP | 1.65287 | 0.642 |
39DAP/27DAP | 0.57954 | 0.392 |
41DAP/39DAP | 1.46215 | 0.349 |
42DAP/41DAP | 1.12299 | 0.871 |
43DAP/42DAP | 1.0254 | 0.948 |
47DAP/43DAP | 1.12005 | 0.842 |
52DAP/47DAP | 1.04393 | 0.969 |
57DAP/52DAP | 1.07046 | 0.964 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30635 | 0.031 |
17DAP/reference | 0.69808 | 0.017 |
27DAP/reference | 0.754 | 0.068 |
39DAP/reference | 0.82152 | 0.07 |
41DAP/reference | 0.64196 | 0.016 |
42DAP/reference | 0.88328 | 0.045 |
43DAP/reference | 0.99452 | 0.745 |
47DAP/reference | 0.91055 | 0.042 |
52DAP/reference | 0.68588 | 0.044 |
57DAP/reference | 1.14631 | 0.419 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93482 | 0.47 |
27DAP/17DAP | 0.9817 | 0.887 |
39DAP/27DAP | 1.05048 | 0.672 |
41DAP/39DAP | 1.11222 | 0.65 |
42DAP/41DAP | 0.99961 | 0.887 |
43DAP/42DAP | 1.06141 | 0.324 |
47DAP/43DAP | 1.01801 | 0.901 |
52DAP/47DAP | 1.11783 | 0.669 |
57DAP/52DAP | 1.06759 | 0.622 |
57DAP/7DAP | 1.15599 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45157 | 0.037 |
17DAP/reference | 0.89191 | 0.192 |
27DAP/reference | 1.35215 | 0.008 |
39DAP/reference | 1.2022 | 0.04 |
41DAP/reference | 1.15865 | 0.141 |
42DAP/reference | 1.36166 | 0.024 |
43DAP/reference | 1.12413 | 0.325 |
47DAP/reference | 1.00709 | 1 |
52DAP/reference | 1.38945 | 0.076 |
57DAP/reference | 1.04361 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07429 | 0.894 |
17DAP/reference | 0.79216 | 0.089 |
27DAP/reference | 0.75414 | 0.081 |
39DAP/reference | 0.77604 | 0.077 |
41DAP/reference | 1.02359 | 0.735 |
42DAP/reference | 0.73926 | 0.012 |
43DAP/reference | 1.19857 | 0.503 |
47DAP/reference | 0.95577 | 0.41 |
52DAP/reference | 0.84391 | 0.22 |
57DAP/reference | 1.03602 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40181 | 0.053 |
17DAP/reference | 0.82098 | 0.198 |
27DAP/reference | 1.01253 | 1 |
39DAP/reference | 1.03801 | 0.691 |
41DAP/reference | 0.96482 | 0.512 |
42DAP/reference | 0.8947 | 0.059 |
43DAP/reference | 0.87152 | 0.092 |
47DAP/reference | 0.74589 | 0.021 |
52DAP/reference | 1.01764 | 1 |
57DAP/reference | 0.84196 | 0.203 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14305 | 1 |
26DAP/20DAP | 0.90374 | 0.244 |
34DAP/26DAP | 1.17269 | 0.542 |
51DAP/34DAP | 1.01305 | 0.962 |
52DAP/51DAP | 0.95306 | 1 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 0.78901 | |
57DAP/55DAP | 1.12543 | 0.805 |
62DAP/57DAP | 1.13065 | 0.515 |
68DAP/62DAP | 0.78011 | 0.505 |
68DAP/14DAP | 1.04454 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91213 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.15796 | |
Mature Green Tomato/Ripe Tomato | 0.80958 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.72522 | 0.057 |
Ripe Pepper/Ripe Tomato | 0.60469 | 1 |
Mature Eggplant/Ripe Tomato | 0.48044 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05428 | 1 |
1-1-2/M82 | 1.20723 | 1 |
12-2/M82 | 1.13815 | 1 |
12-4/M82 | 0.75652 | 0.358 |
1-3/M82 | 2.67443 | |
2-1-1/M82 | 1.02816 | 1 |
2-1/M82 | 0.59048 | 0.322 |
2-6/M82 | 1.42889 | 0.364 |
3-2/M82 | 1.33556 | |
4-1-1/M82 | 1.34989 | 1 |
4-1/M82 | 0.57044 | 0.715 |
4-3-2/M82 | 1.00786 | 1 |
4-3/M82 | 1.78727 | 0.268 |
5-3/M82 | 0.85854 | 0.642 |
6-2/M82 | 0.8782 | 1 |
6-3/M82 | 0.46606 | 0.619 |
7-1/M82 | 0.76935 | |
7-2/M82 | 1.67605 | 0.324 |
9-3-2/M82 | 0.86847 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87437 | |
IL2-6/WTpooled | 0.87571 | |
IL7-5/WTpooled | 1.28101 | |
IL7-3/WTpooled | 0.83391 | 1 |
IL12-4/WTpooled | 0.84167 | 0.581 |
IL1-4/WTpooled | 1.00925 | 1 |
WT/WTpooled | 1.02147 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93938 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05886 | 0.921 |
DC3000/delta hrp 6h | 1.13084 | 1 |
DC3000/delta hrp 12h | 1.12039 | 1 |
DC3000/delta hrp 24h | 1.01089 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.82668 | 0.035 |
DC3000 delta B/DC3000 delta AB | 0.9518 | 0.317 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12319 | 1 |
Exp 36h | 1.44856 | 0.489 |
Exp 60h | 1.16988 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99141 | 1 |
Var 0h | 0.73296 | 0.933 |
Var 12h I row2-row1 | 0.83778 | 0.418 |
Var 12h NI row2-row1 | 0.88957 | 0.627 |
Var 36h I row2-row1 | 1.06324 | 0.742 |
Var 36h NI row2-row1 | 1.29544 | 1 |
Var 60h I row2-row1 | 0.97699 | 0.952 |
Var 60h NI row2-row1 | 1.16719 | 0.904 |
Time course 0hI-0hNI | 0.97947 | 0.935 |
Time course 12hI-12hNI | 0.99769 | 1 |
Time course 36hI-36hNI | 0.84744 | 0.024 |
Time course 60hI-60hNI | 0.50159 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.7725 | 0.249 |
transgenic ySAMdc/azygous control (breaker) | 0.71944 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.99208 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.2497 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.40157 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03322 | 1 |
Manapal/WT (break) | 0.94103 | 1 |
Manapal/WT (red) | 0.82076 | 0.503 |
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