Expression of 1-1-6.3.9.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.890160.486
27DAP/17DAP1.652870.642
39DAP/27DAP0.579540.392
41DAP/39DAP1.462150.349
42DAP/41DAP1.122990.871
43DAP/42DAP1.02540.948
47DAP/43DAP1.120050.842
52DAP/47DAP1.043930.969
57DAP/52DAP1.070460.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.306350.031
17DAP/reference0.698080.017
27DAP/reference0.7540.068
39DAP/reference0.821520.07
41DAP/reference0.641960.016
42DAP/reference0.883280.045
43DAP/reference0.994520.745
47DAP/reference0.910550.042
52DAP/reference0.685880.044
57DAP/reference1.146310.419

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.934820.47
27DAP/17DAP0.98170.887
39DAP/27DAP1.050480.672
41DAP/39DAP1.112220.65
42DAP/41DAP0.999610.887
43DAP/42DAP1.061410.324
47DAP/43DAP1.018010.901
52DAP/47DAP1.117830.669
57DAP/52DAP1.067590.622
57DAP/7DAP1.155991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.451570.037
17DAP/reference0.891910.192
27DAP/reference1.352150.008
39DAP/reference1.20220.04
41DAP/reference1.158650.141
42DAP/reference1.361660.024
43DAP/reference1.124130.325
47DAP/reference1.007091
52DAP/reference1.389450.076
57DAP/reference1.043610.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.074290.894
17DAP/reference0.792160.089
27DAP/reference0.754140.081
39DAP/reference0.776040.077
41DAP/reference1.023590.735
42DAP/reference0.739260.012
43DAP/reference1.198570.503
47DAP/reference0.955770.41
52DAP/reference0.843910.22
57DAP/reference1.036020.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.401810.053
17DAP/reference0.820980.198
27DAP/reference1.012531
39DAP/reference1.038010.691
41DAP/reference0.964820.512
42DAP/reference0.89470.059
43DAP/reference0.871520.092
47DAP/reference0.745890.021
52DAP/reference1.017641
57DAP/reference0.841960.203

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.143051
26DAP/20DAP0.903740.244
34DAP/26DAP1.172690.542
51DAP/34DAP1.013050.962
52DAP/51DAP0.953061
53DAP/52DAPN/AN/A
55DAP/53DAP0.78901
57DAP/55DAP1.125430.805
62DAP/57DAP1.130650.515
68DAP/62DAP0.780110.505
68DAP/14DAP1.044540.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.912130.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.15796
Mature Green Tomato/Ripe Tomato0.809580.317
Immature Eggplant/Mature Eggplant1.725220.057
Ripe Pepper/Ripe Tomato0.604691
Mature Eggplant/Ripe Tomato0.480441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.054281
1-1-2/M821.207231
12-2/M821.138151
12-4/M820.756520.358
1-3/M822.67443
2-1-1/M821.028161
2-1/M820.590480.322
2-6/M821.428890.364
3-2/M821.33556
4-1-1/M821.349891
4-1/M820.570440.715
4-3-2/M821.007861
4-3/M821.787270.268
5-3/M820.858540.642
6-2/M820.87821
6-3/M820.466060.619
7-1/M820.76935
7-2/M821.676050.324
9-3-2/M820.868470.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.87437
IL2-6/WTpooled0.87571
IL7-5/WTpooled1.28101
IL7-3/WTpooled0.833911
IL12-4/WTpooled0.841670.581
IL1-4/WTpooled1.009251
WT/WTpooled1.021471

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.939381

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.058860.921
DC3000/delta hrp 6h1.130841
DC3000/delta hrp 12h1.120391
DC3000/delta hrp 24h1.010890.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.826680.035
DC3000 delta B/DC3000 delta AB0.95180.317

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.123191
Exp 36h1.448560.489
Exp 60h1.169880.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991411
Var 0h0.732960.933
Var 12h I row2-row10.837780.418
Var 12h NI row2-row10.889570.627
Var 36h I row2-row11.063240.742
Var 36h NI row2-row11.295441
Var 60h I row2-row10.976990.952
Var 60h NI row2-row11.167190.904
Time course 0hI-0hNI0.979470.935
Time course 12hI-12hNI0.997691
Time course 36hI-36hNI0.847440.024
Time course 60hI-60hNI0.501590.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.77250.249
transgenic ySAMdc/azygous control (breaker)0.719440.15
transgenic ySAMdc/azygous control (red)0.992081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.24970.077

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.401570.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.033221
Manapal/WT (break)0.941031
Manapal/WT (red)0.820760.503