Expression of 1-1-6.4.1.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06975 | 0.786 |
27DAP/17DAP | 0.8376 | 0.754 |
39DAP/27DAP | 0.74071 | 0.564 |
41DAP/39DAP | 1.61422 | |
42DAP/41DAP | 0.51238 | 0.245 |
43DAP/42DAP | 0.91448 | 0.887 |
47DAP/43DAP | 1.47281 | 0.463 |
52DAP/47DAP | 1.08301 | 0.973 |
57DAP/52DAP | 0.75915 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92159 | 0.092 |
17DAP/reference | 0.9708 | 0.448 |
27DAP/reference | 0.95253 | 0.417 |
39DAP/reference | 0.97333 | 0.6 |
41DAP/reference | 0.98474 | 0.814 |
42DAP/reference | 0.98292 | 0.384 |
43DAP/reference | 1.00705 | 1 |
47DAP/reference | 0.95125 | 0.207 |
52DAP/reference | 1.01933 | 1 |
57DAP/reference | 1.07851 | 0.27 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01007 | 1 |
27DAP/17DAP | 0.98977 | 0.943 |
39DAP/27DAP | 1.00109 | 1 |
41DAP/39DAP | 0.99456 | 0.997 |
42DAP/41DAP | 1.06483 | 0.773 |
43DAP/42DAP | 1.02448 | 0.788 |
47DAP/43DAP | 0.9337 | 0.677 |
52DAP/47DAP | 0.99671 | 0.941 |
57DAP/52DAP | 1.31385 | 0.726 |
57DAP/7DAP | 0.92752 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78762 | 0.115 |
17DAP/reference | 0.71207 | 0.011 |
27DAP/reference | 0.80667 | 0.011 |
39DAP/reference | 0.69123 | 0.011 |
41DAP/reference | 0.7616 | 0.067 |
42DAP/reference | 0.67937 | 0.01 |
43DAP/reference | 0.62132 | 0.011 |
47DAP/reference | 0.78282 | 0.101 |
52DAP/reference | 0.64694 | 0.015 |
57DAP/reference | 0.63832 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07981 | 0.261 |
17DAP/reference | 1.03925 | 0.756 |
27DAP/reference | 1.01413 | 1 |
39DAP/reference | 0.95287 | 0.322 |
41DAP/reference | 0.91405 | 0.137 |
42DAP/reference | 0.94641 | 0.261 |
43DAP/reference | 1.28993 | 0.208 |
47DAP/reference | 0.94568 | 0.12 |
52DAP/reference | 1.01567 | 0.761 |
57DAP/reference | 1.0828 | 0.462 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84456 | 0.046 |
17DAP/reference | 0.99893 | 0.81 |
27DAP/reference | 0.72098 | 0.031 |
39DAP/reference | 0.70651 | 0.015 |
41DAP/reference | 0.9419 | 0.459 |
42DAP/reference | 0.87244 | 0.071 |
43DAP/reference | 0.8583 | 0.12 |
47DAP/reference | 1.04806 | 0.585 |
52DAP/reference | 0.84874 | 0.174 |
57DAP/reference | 1.15753 | 0.614 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0821 | 0.966 |
26DAP/20DAP | 0.86173 | 0.512 |
34DAP/26DAP | 1.1863 | 1 |
51DAP/34DAP | 1.2099 | 0.121 |
52DAP/51DAP | 1.1844 | 0.367 |
53DAP/52DAP | 1.1828 | 0.25 |
55DAP/53DAP | 0.92152 | 0.376 |
57DAP/55DAP | 1.38878 | 0.424 |
62DAP/57DAP | 1.16637 | 0.678 |
68DAP/62DAP | 1.08104 | 1 |
68DAP/14DAP | 1.46514 | 0.189 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.52785 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.3626 | 0.073 |
Mature Green Tomato/Ripe Tomato | 0.98527 | 0.774 |
Immature Eggplant/Mature Eggplant | 0.59036 | |
Ripe Pepper/Ripe Tomato | 6.56397 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.59011 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.20016 | 0.877 |
1-1-2/M82 | 1.04024 | 1 |
12-2/M82 | 1.13591 | 1 |
12-4/M82 | 0.93092 | 1 |
1-3/M82 | 0.9805 | 1 |
2-1-1/M82 | 1.07275 | 0.764 |
2-1/M82 | 1.26175 | 0.32 |
2-6/M82 | 0.93407 | 1 |
3-2/M82 | 0.95664 | 1 |
4-1-1/M82 | 0.97168 | 1 |
4-1/M82 | 0.87111 | 1 |
4-3-2/M82 | 0.84792 | 1 |
4-3/M82 | 0.99279 | 1 |
5-3/M82 | 0.88329 | 0.642 |
6-2/M82 | 0.93235 | 1 |
6-3/M82 | 0.91021 | |
7-1/M82 | 1.05542 | 1 |
7-2/M82 | 0.99389 | 1 |
9-3-2/M82 | 0.85442 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.855 | 0.321 |
IL2-6/WTpooled | 1.20641 | 0.395 |
IL7-5/WTpooled | 0.81328 | 0.31 |
IL7-3/WTpooled | 0.73144 | 0.31 |
IL12-4/WTpooled | 0.80792 | 0.71 |
IL1-4/WTpooled | 0.92635 | 0.834 |
WT/WTpooled | 1.06476 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89587 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02367 | 0.846 |
DC3000/delta hrp 6h | 1.00061 | 0.95 |
DC3000/delta hrp 12h | 0.93994 | 1 |
DC3000/delta hrp 24h | 0.70279 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.41449 | 0.093 |
DC3000 delta B/DC3000 delta AB | 0.43087 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89844 | 1 |
Exp 36h | 0.86105 | 0.749 |
Exp 60h | 0.71644 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96492 | 1 |
Var 0h | 0.97758 | 1 |
Var 12h I row2-row1 | 0.99058 | 1 |
Var 12h NI row2-row1 | 1.05062 | 1 |
Var 36h I row2-row1 | 0.90676 | 0.805 |
Var 36h NI row2-row1 | 1.2356 | 0.482 |
Var 60h I row2-row1 | 1.1018 | 0.523 |
Var 60h NI row2-row1 | 1.10518 | 0.904 |
Time course 0hI-0hNI | 0.99163 | 1 |
Time course 12hI-12hNI | 0.93688 | 0.506 |
Time course 36hI-36hNI | 0.80376 | 0.023 |
Time course 60hI-60hNI | 0.2116 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92887 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 0.96922 | 1 |
transgenic ySAMdc/azygous control (red) | 1.4224 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02024 | 0.556 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 4.01089 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.57561 | 0.088 |
Manapal/WT (break) | 1.37786 | 0.14 |
Manapal/WT (red) | 1.32093 | 0.222 |
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