Expression of 1-1-6.4.1.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.069750.786
27DAP/17DAP0.83760.754
39DAP/27DAP0.740710.564
41DAP/39DAP1.61422
42DAP/41DAP0.512380.245
43DAP/42DAP0.914480.887
47DAP/43DAP1.472810.463
52DAP/47DAP1.083010.973
57DAP/52DAP0.759150.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.921590.092
17DAP/reference0.97080.448
27DAP/reference0.952530.417
39DAP/reference0.973330.6
41DAP/reference0.984740.814
42DAP/reference0.982920.384
43DAP/reference1.007051
47DAP/reference0.951250.207
52DAP/reference1.019331
57DAP/reference1.078510.27

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.010071
27DAP/17DAP0.989770.943
39DAP/27DAP1.001091
41DAP/39DAP0.994560.997
42DAP/41DAP1.064830.773
43DAP/42DAP1.024480.788
47DAP/43DAP0.93370.677
52DAP/47DAP0.996710.941
57DAP/52DAP1.313850.726
57DAP/7DAP0.927521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.787620.115
17DAP/reference0.712070.011
27DAP/reference0.806670.011
39DAP/reference0.691230.011
41DAP/reference0.76160.067
42DAP/reference0.679370.01
43DAP/reference0.621320.011
47DAP/reference0.782820.101
52DAP/reference0.646940.015
57DAP/reference0.638320.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079810.261
17DAP/reference1.039250.756
27DAP/reference1.014131
39DAP/reference0.952870.322
41DAP/reference0.914050.137
42DAP/reference0.946410.261
43DAP/reference1.289930.208
47DAP/reference0.945680.12
52DAP/reference1.015670.761
57DAP/reference1.08280.462

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.844560.046
17DAP/reference0.998930.81
27DAP/reference0.720980.031
39DAP/reference0.706510.015
41DAP/reference0.94190.459
42DAP/reference0.872440.071
43DAP/reference0.85830.12
47DAP/reference1.048060.585
52DAP/reference0.848740.174
57DAP/reference1.157530.614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.08210.966
26DAP/20DAP0.861730.512
34DAP/26DAP1.18631
51DAP/34DAP1.20990.121
52DAP/51DAP1.18440.367
53DAP/52DAP1.18280.25
55DAP/53DAP0.921520.376
57DAP/55DAP1.388780.424
62DAP/57DAP1.166370.678
68DAP/62DAP1.081041
68DAP/14DAP1.465140.189

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.527850.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.36260.073
Mature Green Tomato/Ripe Tomato0.985270.774
Immature Eggplant/Mature Eggplant0.59036
Ripe Pepper/Ripe Tomato6.563970.256
Mature Eggplant/Ripe Tomato1.590110.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.200160.877
1-1-2/M821.040241
12-2/M821.135911
12-4/M820.930921
1-3/M820.98051
2-1-1/M821.072750.764
2-1/M821.261750.32
2-6/M820.934071
3-2/M820.956641
4-1-1/M820.971681
4-1/M820.871111
4-3-2/M820.847921
4-3/M820.992791
5-3/M820.883290.642
6-2/M820.932351
6-3/M820.91021
7-1/M821.055421
7-2/M820.993891
9-3-2/M820.854420.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.8550.321
IL2-6/WTpooled1.206410.395
IL7-5/WTpooled0.813280.31
IL7-3/WTpooled0.731440.31
IL12-4/WTpooled0.807920.71
IL1-4/WTpooled0.926350.834
WT/WTpooled1.064761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.895870.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.023670.846
DC3000/delta hrp 6h1.000610.95
DC3000/delta hrp 12h0.939941
DC3000/delta hrp 24h0.702790.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.414490.093
DC3000 delta B/DC3000 delta AB0.430870.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.898441
Exp 36h0.861050.749
Exp 60h0.716440.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964921
Var 0h0.977581
Var 12h I row2-row10.990581
Var 12h NI row2-row11.050621
Var 36h I row2-row10.906760.805
Var 36h NI row2-row11.23560.482
Var 60h I row2-row11.10180.523
Var 60h NI row2-row11.105180.904
Time course 0hI-0hNI0.991631
Time course 12hI-12hNI0.936880.506
Time course 36hI-36hNI0.803760.023
Time course 60hI-60hNI0.21160.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.928870.278
transgenic ySAMdc/azygous control (breaker)0.969221
transgenic ySAMdc/azygous control (red)1.42240.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.020240.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt4.010890.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.575610.088
Manapal/WT (break)1.377860.14
Manapal/WT (red)1.320930.222