Expression of 1-1-6.4.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99958 | 0.901 |
27DAP/17DAP | 1.2077 | 0.839 |
39DAP/27DAP | 1.53983 | 0.167 |
41DAP/39DAP | 0.72729 | 0.131 |
42DAP/41DAP | 0.89356 | 1 |
43DAP/42DAP | 1.25573 | 1 |
47DAP/43DAP | 0.88114 | 0.603 |
52DAP/47DAP | 1.12002 | 0.886 |
57DAP/52DAP | 1.45502 | 0.827 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14378 | 0.041 |
17DAP/reference | 1.17552 | 0.074 |
27DAP/reference | 1.07015 | 0.216 |
39DAP/reference | 1.05911 | 0.393 |
41DAP/reference | 1.18355 | 0.043 |
42DAP/reference | 1.04851 | 0.311 |
43DAP/reference | 1.08277 | 0.095 |
47DAP/reference | 1.15731 | 0.01 |
52DAP/reference | 1.05608 | 0.73 |
57DAP/reference | 0.97737 | 0.526 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8317 | 0.277 |
27DAP/17DAP | 1.47643 | 0.061 |
39DAP/27DAP | 0.96589 | 0.754 |
41DAP/39DAP | 1.07698 | 1 |
42DAP/41DAP | 1.02594 | 0.91 |
43DAP/42DAP | 1.19712 | 0.25 |
47DAP/43DAP | 0.89068 | 0.489 |
52DAP/47DAP | 0.95615 | 0.839 |
57DAP/52DAP | 1.08831 | 0.885 |
57DAP/7DAP | 0.96244 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.11333 | 0.025 |
17DAP/reference | 1.28588 | 0.112 |
27DAP/reference | 1.49385 | 0.012 |
39DAP/reference | 1.31698 | 0.012 |
41DAP/reference | 1.44356 | 0.02 |
42DAP/reference | 1.51219 | 0.03 |
43DAP/reference | 1.35084 | 0.008 |
47DAP/reference | 1.26359 | 0.025 |
52DAP/reference | 1.39451 | 0.016 |
57DAP/reference | 1.28531 | 0.029 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9778 | 0.72 |
17DAP/reference | 1.07673 | 0.357 |
27DAP/reference | 1.20762 | 0.235 |
39DAP/reference | 1.17933 | 0.316 |
41DAP/reference | 1.08903 | 0.427 |
42DAP/reference | 1.05837 | 0.532 |
43DAP/reference | 0.97272 | 0.552 |
47DAP/reference | 1.06962 | 0.247 |
52DAP/reference | 1.01597 | 0.279 |
57DAP/reference | 0.74727 | 0.194 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.73767 | 0.016 |
17DAP/reference | 1.00947 | 1 |
27DAP/reference | 1.05484 | 0.447 |
39DAP/reference | 1.21455 | 0.005 |
41DAP/reference | 1.00229 | 1 |
42DAP/reference | 1.05699 | 0.818 |
43DAP/reference | 1.09696 | 0.259 |
47DAP/reference | 1.20655 | 0.048 |
52DAP/reference | 1.25985 | 0.257 |
57DAP/reference | 1.11896 | 0.385 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04235 | 1 |
26DAP/20DAP | 0.99563 | 1 |
34DAP/26DAP | 0.8613 | 0.185 |
51DAP/34DAP | 1.3258 | 0.121 |
52DAP/51DAP | 0.7999 | 1 |
53DAP/52DAP | 1.11099 | 0.858 |
55DAP/53DAP | 0.88795 | 0.077 |
57DAP/55DAP | 1.3052 | 0.222 |
62DAP/57DAP | 1.31603 | 0.393 |
68DAP/62DAP | 0.97732 | 0.885 |
68DAP/14DAP | 1.20797 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.40245 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.63554 | 0.167 |
Mature Green Tomato/Ripe Tomato | 1.29067 | 0.577 |
Immature Eggplant/Mature Eggplant | 1.21498 | 0.116 |
Ripe Pepper/Ripe Tomato | 0.68873 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.17388 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.7637 | 0.708 |
1-1-2/M82 | 1.07969 | 1 |
12-2/M82 | 0.9698 | 1 |
12-4/M82 | 1.138 | 1 |
1-3/M82 | 1.57982 | 0.479 |
2-1-1/M82 | 0.92612 | 0.92 |
2-1/M82 | 1.13527 | 1 |
2-6/M82 | 0.97327 | 1 |
3-2/M82 | 1.119 | 0.549 |
4-1-1/M82 | 0.87098 | 1 |
4-1/M82 | 0.87057 | |
4-3-2/M82 | 1.18151 | 0.284 |
4-3/M82 | 1.32231 | 0.268 |
5-3/M82 | 1.10577 | 1 |
6-2/M82 | 1.42348 | 1 |
6-3/M82 | 0.9501 | 1 |
7-1/M82 | 1.15805 | 0.741 |
7-2/M82 | 1.06335 | 1 |
9-3-2/M82 | 1.1604 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.82121 | 1 |
IL2-6/WTpooled | 1.11626 | 0.659 |
IL7-5/WTpooled | 0.80282 | 1 |
IL7-3/WTpooled | 1.00686 | 1 |
IL12-4/WTpooled | 0.79371 | 0.71 |
IL1-4/WTpooled | 0.99365 | 1 |
WT/WTpooled | 0.99414 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.29683 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10628 | 0.921 |
DC3000/delta hrp 6h | 1.20212 | 1 |
DC3000/delta hrp 12h | 1.05218 | 1 |
DC3000/delta hrp 24h | 1.3161 | 0.05 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.27894 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.22922 | 0.302 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87031 | 1 |
Exp 36h | 1.40804 | 0.489 |
Exp 60h | 1.28722 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99275 | 1 |
Var 0h | 2.15216 | 1 |
Var 12h I row2-row1 | 1.23218 | 0.443 |
Var 12h NI row2-row1 | 1.15708 | 0.649 |
Var 36h I row2-row1 | 1.11061 | 0.742 |
Var 36h NI row2-row1 | 0.9571 | 0.791 |
Var 60h I row2-row1 | 0.83714 | 0.582 |
Var 60h NI row2-row1 | 0.99455 | 1 |
Time course 0hI-0hNI | 0.95759 | 0.777 |
Time course 12hI-12hNI | 1.16712 | 0.145 |
Time course 36hI-36hNI | 1.38225 | 0.028 |
Time course 60hI-60hNI | 2.03597 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09893 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 0.70094 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.8914 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14494 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85212 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02276 | 1 |
Manapal/WT (break) | 1.05354 | 1 |
Manapal/WT (red) | 0.82864 | 0.181 |
|
|