Expression of 1-1-6.4.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999580.901
27DAP/17DAP1.20770.839
39DAP/27DAP1.539830.167
41DAP/39DAP0.727290.131
42DAP/41DAP0.893561
43DAP/42DAP1.255731
47DAP/43DAP0.881140.603
52DAP/47DAP1.120020.886
57DAP/52DAP1.455020.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.143780.041
17DAP/reference1.175520.074
27DAP/reference1.070150.216
39DAP/reference1.059110.393
41DAP/reference1.183550.043
42DAP/reference1.048510.311
43DAP/reference1.082770.095
47DAP/reference1.157310.01
52DAP/reference1.056080.73
57DAP/reference0.977370.526

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.83170.277
27DAP/17DAP1.476430.061
39DAP/27DAP0.965890.754
41DAP/39DAP1.076981
42DAP/41DAP1.025940.91
43DAP/42DAP1.197120.25
47DAP/43DAP0.890680.489
52DAP/47DAP0.956150.839
57DAP/52DAP1.088310.885
57DAP/7DAP0.962441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.113330.025
17DAP/reference1.285880.112
27DAP/reference1.493850.012
39DAP/reference1.316980.012
41DAP/reference1.443560.02
42DAP/reference1.512190.03
43DAP/reference1.350840.008
47DAP/reference1.263590.025
52DAP/reference1.394510.016
57DAP/reference1.285310.029

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97780.72
17DAP/reference1.076730.357
27DAP/reference1.207620.235
39DAP/reference1.179330.316
41DAP/reference1.089030.427
42DAP/reference1.058370.532
43DAP/reference0.972720.552
47DAP/reference1.069620.247
52DAP/reference1.015970.279
57DAP/reference0.747270.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.737670.016
17DAP/reference1.009471
27DAP/reference1.054840.447
39DAP/reference1.214550.005
41DAP/reference1.002291
42DAP/reference1.056990.818
43DAP/reference1.096960.259
47DAP/reference1.206550.048
52DAP/reference1.259850.257
57DAP/reference1.118960.385

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042351
26DAP/20DAP0.995631
34DAP/26DAP0.86130.185
51DAP/34DAP1.32580.121
52DAP/51DAP0.79991
53DAP/52DAP1.110990.858
55DAP/53DAP0.887950.077
57DAP/55DAP1.30520.222
62DAP/57DAP1.316030.393
68DAP/62DAP0.977320.885
68DAP/14DAP1.207970.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.402450.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.635540.167
Mature Green Tomato/Ripe Tomato1.290670.577
Immature Eggplant/Mature Eggplant1.214980.116
Ripe Pepper/Ripe Tomato0.688730.224
Mature Eggplant/Ripe Tomato1.173880.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.76370.708
1-1-2/M821.079691
12-2/M820.96981
12-4/M821.1381
1-3/M821.579820.479
2-1-1/M820.926120.92
2-1/M821.135271
2-6/M820.973271
3-2/M821.1190.549
4-1-1/M820.870981
4-1/M820.87057
4-3-2/M821.181510.284
4-3/M821.322310.268
5-3/M821.105771
6-2/M821.423481
6-3/M820.95011
7-1/M821.158050.741
7-2/M821.063351
9-3-2/M821.16041

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.821211
IL2-6/WTpooled1.116260.659
IL7-5/WTpooled0.802821
IL7-3/WTpooled1.006861
IL12-4/WTpooled0.793710.71
IL1-4/WTpooled0.993651
WT/WTpooled0.994141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.296831

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.106280.921
DC3000/delta hrp 6h1.202121
DC3000/delta hrp 12h1.052181
DC3000/delta hrp 24h1.31610.05

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.278940.042
DC3000 delta B/DC3000 delta AB1.229220.302

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.870311
Exp 36h1.408040.489
Exp 60h1.287220.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992751
Var 0h2.152161
Var 12h I row2-row11.232180.443
Var 12h NI row2-row11.157080.649
Var 36h I row2-row11.110610.742
Var 36h NI row2-row10.95710.791
Var 60h I row2-row10.837140.582
Var 60h NI row2-row10.994551
Time course 0hI-0hNI0.957590.777
Time course 12hI-12hNI1.167120.145
Time course 36hI-36hNI1.382250.028
Time course 60hI-60hNI2.035970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.098930.699
transgenic ySAMdc/azygous control (breaker)0.700940.142
transgenic ySAMdc/azygous control (red)0.89141

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.144940.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.852120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.022761
Manapal/WT (break)1.053541
Manapal/WT (red)0.828640.181