Expression of 1-1-6.4.1.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99538 | 0.867 |
27DAP/17DAP | 1.12838 | 0.859 |
39DAP/27DAP | 0.94298 | 0.67 |
41DAP/39DAP | 1.4271 | 0.758 |
42DAP/41DAP | 1.06268 | 0.938 |
43DAP/42DAP | 0.77266 | 0.686 |
47DAP/43DAP | 1.24743 | 0.334 |
52DAP/47DAP | 1.23658 | 0.53 |
57DAP/52DAP | 1.29454 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89067 | 0.07 |
17DAP/reference | 0.85137 | 0.02 |
27DAP/reference | 0.98528 | 0.694 |
39DAP/reference | 0.96964 | 0.6 |
41DAP/reference | 0.87362 | 0.065 |
42DAP/reference | 0.92743 | 0.054 |
43DAP/reference | 0.96977 | 0.538 |
47DAP/reference | 0.96011 | 0.392 |
52DAP/reference | 1.12449 | 0.102 |
57DAP/reference | 1.03197 | 0.332 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17817 | 0.455 |
27DAP/17DAP | 1.09036 | 0.686 |
39DAP/27DAP | 0.93247 | 0.607 |
41DAP/39DAP | 1.18259 | 0.407 |
42DAP/41DAP | 0.84044 | 0.109 |
43DAP/42DAP | 0.82087 | 0.089 |
47DAP/43DAP | 1.06811 | 0.601 |
52DAP/47DAP | 1.08388 | 0.804 |
57DAP/52DAP | 1.13582 | 0.462 |
57DAP/7DAP | 1.62432 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91261 | |
17DAP/reference | 0.93906 | 0.024 |
27DAP/reference | 0.82044 | 0.014 |
39DAP/reference | 0.85525 | 0.02 |
41DAP/reference | 0.80587 | 0.022 |
42DAP/reference | 0.81482 | 0.01 |
43DAP/reference | 0.79599 | 0.011 |
47DAP/reference | 0.8989 | 0.383 |
52DAP/reference | 0.7584 | 0.033 |
57DAP/reference | 0.71991 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93408 | 0.286 |
17DAP/reference | 1.04101 | 0.961 |
27DAP/reference | 1.05493 | 0.745 |
39DAP/reference | 1.02059 | 1 |
41DAP/reference | 0.91218 | 0.164 |
42DAP/reference | 0.89352 | 0.025 |
43DAP/reference | 1.08552 | 0.489 |
47DAP/reference | 0.92663 | 0.214 |
52DAP/reference | 0.94116 | 0.433 |
57DAP/reference | 0.86099 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85936 | 0.055 |
17DAP/reference | 1.04282 | 0.854 |
27DAP/reference | 0.81487 | 0.056 |
39DAP/reference | 0.8629 | 0.147 |
41DAP/reference | 0.84777 | 0.021 |
42DAP/reference | 0.89282 | 0.134 |
43DAP/reference | 0.80959 | 0.019 |
47DAP/reference | 1.05947 | 0.543 |
52DAP/reference | 0.96056 | 0.623 |
57DAP/reference | 1.04135 | 0.933 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.2412 | 0.966 |
26DAP/20DAP | 1.6427 | 0.147 |
34DAP/26DAP | 0.84409 | 0.741 |
51DAP/34DAP | 1.47421 | 0.052 |
52DAP/51DAP | 1.14873 | 0.606 |
53DAP/52DAP | 1.02062 | 0.961 |
55DAP/53DAP | 1.00749 | 0.925 |
57DAP/55DAP | 1.10989 | 0.643 |
62DAP/57DAP | 1.12382 | 0.833 |
68DAP/62DAP | 0.98618 | 0.834 |
68DAP/14DAP | 1.30455 | 0.311 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04937 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7945 | |
Mature Green Tomato/Ripe Tomato | 1.45839 | 0.437 |
Immature Eggplant/Mature Eggplant | 1.00571 | 1 |
Ripe Pepper/Ripe Tomato | 0.71812 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.88247 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02337 | 1 |
1-1-2/M82 | 1.00116 | 1 |
12-2/M82 | 1.08703 | 1 |
12-4/M82 | 1.06021 | 0.611 |
1-3/M82 | 0.77348 | |
2-1-1/M82 | 0.29962 | 1 |
2-1/M82 | 1.33567 | 1 |
2-6/M82 | 0.8259 | 1 |
3-2/M82 | 1.09431 | 0.967 |
4-1-1/M82 | 0.9247 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.64521 | |
4-3/M82 | 0.92616 | 1 |
5-3/M82 | 1.0212 | 1 |
6-2/M82 | 0.87008 | 1 |
6-3/M82 | 1.06881 | 1 |
7-1/M82 | 0.85849 | 0.803 |
7-2/M82 | 0.84228 | 0.599 |
9-3-2/M82 | 0.80103 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.8158 | 0.247 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.87623 | 1 |
IL1-4/WTpooled | 2.43778 | 1 |
WT/WTpooled | 1.20516 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82442 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02843 | 0.921 |
DC3000/delta hrp 6h | 1.40233 | 1 |
DC3000/delta hrp 12h | 0.93857 | 1 |
DC3000/delta hrp 24h | 0.96605 | 0.794 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.07574 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93902 | 1 |
Exp 36h | 0.84107 | 0.426 |
Exp 60h | 0.98864 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00427 | 1 |
Var 0h | 0.50591 | 1 |
Var 12h I row2-row1 | 1.05983 | 0.506 |
Var 12h NI row2-row1 | 1.25946 | 1 |
Var 36h I row2-row1 | 0.89771 | 0.313 |
Var 36h NI row2-row1 | 1.16058 | 0.482 |
Var 60h I row2-row1 | 0.9181 | 0.306 |
Var 60h NI row2-row1 | 0.8095 | 0.539 |
Time course 0hI-0hNI | 0.90543 | 0.6 |
Time course 12hI-12hNI | 0.9181 | 0.436 |
Time course 36hI-36hNI | 0.91801 | 0.077 |
Time course 60hI-60hNI | 1.39819 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88493 | 0.229 |
transgenic ySAMdc/azygous control (breaker) | 0.72559 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.91216 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07744 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1948 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92212 | 1 |
Manapal/WT (break) | 0.84059 | 0.333 |
Manapal/WT (red) | 0.92814 | 0.36 |
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