Expression of 1-1-6.4.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995380.867
27DAP/17DAP1.128380.859
39DAP/27DAP0.942980.67
41DAP/39DAP1.42710.758
42DAP/41DAP1.062680.938
43DAP/42DAP0.772660.686
47DAP/43DAP1.247430.334
52DAP/47DAP1.236580.53
57DAP/52DAP1.294540.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.890670.07
17DAP/reference0.851370.02
27DAP/reference0.985280.694
39DAP/reference0.969640.6
41DAP/reference0.873620.065
42DAP/reference0.927430.054
43DAP/reference0.969770.538
47DAP/reference0.960110.392
52DAP/reference1.124490.102
57DAP/reference1.031970.332

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.178170.455
27DAP/17DAP1.090360.686
39DAP/27DAP0.932470.607
41DAP/39DAP1.182590.407
42DAP/41DAP0.840440.109
43DAP/42DAP0.820870.089
47DAP/43DAP1.068110.601
52DAP/47DAP1.083880.804
57DAP/52DAP1.135820.462
57DAP/7DAP1.624320.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91261
17DAP/reference0.939060.024
27DAP/reference0.820440.014
39DAP/reference0.855250.02
41DAP/reference0.805870.022
42DAP/reference0.814820.01
43DAP/reference0.795990.011
47DAP/reference0.89890.383
52DAP/reference0.75840.033
57DAP/reference0.719910.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934080.286
17DAP/reference1.041010.961
27DAP/reference1.054930.745
39DAP/reference1.020591
41DAP/reference0.912180.164
42DAP/reference0.893520.025
43DAP/reference1.085520.489
47DAP/reference0.926630.214
52DAP/reference0.941160.433
57DAP/reference0.860990.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.859360.055
17DAP/reference1.042820.854
27DAP/reference0.814870.056
39DAP/reference0.86290.147
41DAP/reference0.847770.021
42DAP/reference0.892820.134
43DAP/reference0.809590.019
47DAP/reference1.059470.543
52DAP/reference0.960560.623
57DAP/reference1.041350.933

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.24120.966
26DAP/20DAP1.64270.147
34DAP/26DAP0.844090.741
51DAP/34DAP1.474210.052
52DAP/51DAP1.148730.606
53DAP/52DAP1.020620.961
55DAP/53DAP1.007490.925
57DAP/55DAP1.109890.643
62DAP/57DAP1.123820.833
68DAP/62DAP0.986180.834
68DAP/14DAP1.304550.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.049370.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.7945
Mature Green Tomato/Ripe Tomato1.458390.437
Immature Eggplant/Mature Eggplant1.005711
Ripe Pepper/Ripe Tomato0.718120.293
Mature Eggplant/Ripe Tomato0.882471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.023371
1-1-2/M821.001161
12-2/M821.087031
12-4/M821.060210.611
1-3/M820.77348
2-1-1/M820.299621
2-1/M821.335671
2-6/M820.82591
3-2/M821.094310.967
4-1-1/M820.92471
4-1/M82N/AN/A
4-3-2/M820.64521
4-3/M820.926161
5-3/M821.02121
6-2/M820.870081
6-3/M821.068811
7-1/M820.858490.803
7-2/M820.842280.599
9-3-2/M820.801030.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.81580.247
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.876231
IL1-4/WTpooled2.437781
WT/WTpooled1.205161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.824420.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.028430.921
DC3000/delta hrp 6h1.402331
DC3000/delta hrp 12h0.938571
DC3000/delta hrp 24h0.966050.794

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.07574
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.939021
Exp 36h0.841070.426
Exp 60h0.988640.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004271
Var 0h0.505911
Var 12h I row2-row11.059830.506
Var 12h NI row2-row11.259461
Var 36h I row2-row10.897710.313
Var 36h NI row2-row11.160580.482
Var 60h I row2-row10.91810.306
Var 60h NI row2-row10.80950.539
Time course 0hI-0hNI0.905430.6
Time course 12hI-12hNI0.91810.436
Time course 36hI-36hNI0.918010.077
Time course 60hI-60hNI1.398191

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.884930.229
transgenic ySAMdc/azygous control (breaker)0.725590.251
transgenic ySAMdc/azygous control (red)0.912161

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.077440.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.19480.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.922121
Manapal/WT (break)0.840590.333
Manapal/WT (red)0.928140.36