Expression of 1-1-6.4.1.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.47 | 0.014 |
27DAP/17DAP | 0.59517 | 0.053 |
39DAP/27DAP | 0.97461 | 0.631 |
41DAP/39DAP | 0.59012 | 0.164 |
42DAP/41DAP | 0.99047 | 1 |
43DAP/42DAP | 1.1308 | 0.869 |
47DAP/43DAP | 1.01437 | 0.92 |
52DAP/47DAP | 1.06597 | 1 |
57DAP/52DAP | 1.66468 | 0.492 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.57219 | 0.026 |
17DAP/reference | 1.05759 | 0.369 |
27DAP/reference | 1.10149 | 0.277 |
39DAP/reference | 0.75937 | 0.026 |
41DAP/reference | 0.71611 | 0.009 |
42DAP/reference | 0.92484 | 0.062 |
43DAP/reference | 0.81746 | 0.019 |
47DAP/reference | 0.91561 | 0.083 |
52DAP/reference | 0.96374 | 0.438 |
57DAP/reference | 1.12928 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29364 | |
27DAP/17DAP | 1.10013 | |
39DAP/27DAP | 0.78294 | 0.502 |
41DAP/39DAP | 0.40391 | |
42DAP/41DAP | 1.33816 | 0.55 |
43DAP/42DAP | 0.92109 | 0.854 |
47DAP/43DAP | 1.45446 | 0.359 |
52DAP/47DAP | 0.89776 | 0.884 |
57DAP/52DAP | 1.62932 | 0.846 |
57DAP/7DAP | 2.42644 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.58316 | 0.029 |
17DAP/reference | 1.3669 | 0.014 |
27DAP/reference | 1.18053 | 0.088 |
39DAP/reference | 1.31451 | 0.066 |
41DAP/reference | 1.09683 | 0.836 |
42DAP/reference | 1.23795 | 0.024 |
43DAP/reference | 0.93999 | 0.368 |
47DAP/reference | 0.83002 | 0.034 |
52DAP/reference | 0.88106 | 0.053 |
57DAP/reference | 1.0387 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40514 | 0.177 |
17DAP/reference | 1.14165 | 0.613 |
27DAP/reference | 1.13019 | 0.692 |
39DAP/reference | 1.01928 | 1 |
41DAP/reference | 1.0463 | 1 |
42DAP/reference | 1.04697 | 1 |
43DAP/reference | 0.69238 | 0.005 |
47DAP/reference | 0.77901 | 0.043 |
52DAP/reference | 1.0005 | 0.713 |
57DAP/reference | 1.15585 | 0.868 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.38184 | 0.015 |
17DAP/reference | 1.53601 | 0.096 |
27DAP/reference | 1.38905 | 0.028 |
39DAP/reference | 1.21144 | 0.377 |
41DAP/reference | 1.01977 | 0.961 |
42DAP/reference | 1.02239 | 1 |
43DAP/reference | 0.9566 | 0.468 |
47DAP/reference | 0.84444 | 0.052 |
52DAP/reference | 1.0597 | 1 |
57DAP/reference | 1.17486 | 0.245 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23238 | 0.916 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.60118 | 0.219 |
51DAP/34DAP | 0.55614 | |
52DAP/51DAP | 0.53487 | 1 |
53DAP/52DAP | 0.68072 | 0.194 |
55DAP/53DAP | 1.01094 | 0.82 |
57DAP/55DAP | 0.75923 | 0.297 |
62DAP/57DAP | 1.1106 | 0.902 |
68DAP/62DAP | 3.45557 | 0.383 |
68DAP/14DAP | 0.59438 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0573 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 6.79657 | 0.058 |
Mature Green Tomato/Ripe Tomato | 14.0539 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.2591 | 0.062 |
Ripe Pepper/Ripe Tomato | 55.65 | 0.256 |
Mature Eggplant/Ripe Tomato | 38.1291 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.85909 | |
12-2/M82 | 1.28404 | |
12-4/M82 | 0.98533 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.27974 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.81237 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.45085 | |
5-3/M82 | 1.15787 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.64071 | |
7-2/M82 | 0.91163 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.73493 | 0.277 |
IL2-6/WTpooled | 1.19289 | 0.441 |
IL7-5/WTpooled | 0.50732 | 1 |
IL7-3/WTpooled | 1.21882 | 1 |
IL12-4/WTpooled | 1.28715 | 0.891 |
IL1-4/WTpooled | 0.85302 | 0.562 |
WT/WTpooled | 1.1199 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88964 | 1 |
DC3000/delta hrp 6h | 1.25241 | 0.631 |
DC3000/delta hrp 12h | 1.37472 | 1 |
DC3000/delta hrp 24h | 0.53005 | 0.046 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9046 | 1 |
Exp 36h | 0.5263 | 0.41 |
Exp 60h | 0.53905 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.13467 | |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.6148 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.34487 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04312 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.63242 | 0.065 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 6.42991 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.07066 | 0.096 |
Manapal/WT (break) | 2.23949 | 0.126 |
Manapal/WT (red) | 1.23163 | 1 |
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