Expression of 1-1-6.4.1.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.470.014
27DAP/17DAP0.595170.053
39DAP/27DAP0.974610.631
41DAP/39DAP0.590120.164
42DAP/41DAP0.990471
43DAP/42DAP1.13080.869
47DAP/43DAP1.014370.92
52DAP/47DAP1.065971
57DAP/52DAP1.664680.492

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.572190.026
17DAP/reference1.057590.369
27DAP/reference1.101490.277
39DAP/reference0.759370.026
41DAP/reference0.716110.009
42DAP/reference0.924840.062
43DAP/reference0.817460.019
47DAP/reference0.915610.083
52DAP/reference0.963740.438
57DAP/reference1.129280.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.29364
27DAP/17DAP1.10013
39DAP/27DAP0.782940.502
41DAP/39DAP0.40391
42DAP/41DAP1.338160.55
43DAP/42DAP0.921090.854
47DAP/43DAP1.454460.359
52DAP/47DAP0.897760.884
57DAP/52DAP1.629320.846
57DAP/7DAP2.42644

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.583160.029
17DAP/reference1.36690.014
27DAP/reference1.180530.088
39DAP/reference1.314510.066
41DAP/reference1.096830.836
42DAP/reference1.237950.024
43DAP/reference0.939990.368
47DAP/reference0.830020.034
52DAP/reference0.881060.053
57DAP/reference1.03870.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.405140.177
17DAP/reference1.141650.613
27DAP/reference1.130190.692
39DAP/reference1.019281
41DAP/reference1.04631
42DAP/reference1.046971
43DAP/reference0.692380.005
47DAP/reference0.779010.043
52DAP/reference1.00050.713
57DAP/reference1.155850.868

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.381840.015
17DAP/reference1.536010.096
27DAP/reference1.389050.028
39DAP/reference1.211440.377
41DAP/reference1.019770.961
42DAP/reference1.022391
43DAP/reference0.95660.468
47DAP/reference0.844440.052
52DAP/reference1.05971
57DAP/reference1.174860.245

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.232380.916
26DAP/20DAPN/AN/A
34DAP/26DAP0.601180.219
51DAP/34DAP0.55614
52DAP/51DAP0.534871
53DAP/52DAP0.680720.194
55DAP/53DAP1.010940.82
57DAP/55DAP0.759230.297
62DAP/57DAP1.11060.902
68DAP/62DAP3.455570.383
68DAP/14DAP0.594380.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.0573

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper6.796570.058
Mature Green Tomato/Ripe Tomato14.05390.015
Immature Eggplant/Mature Eggplant0.25910.062
Ripe Pepper/Ripe Tomato55.650.256
Mature Eggplant/Ripe Tomato38.12910.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.85909
12-2/M821.28404
12-4/M820.985330.619
1-3/M82N/AN/A
2-1-1/M820.27974
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.81237
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.45085
5-3/M821.15787
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.64071
7-2/M820.91163
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.734930.277
IL2-6/WTpooled1.192890.441
IL7-5/WTpooled0.507321
IL7-3/WTpooled1.218821
IL12-4/WTpooled1.287150.891
IL1-4/WTpooled0.853020.562
WT/WTpooled1.11991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.889641
DC3000/delta hrp 6h1.252410.631
DC3000/delta hrp 12h1.374721
DC3000/delta hrp 24h0.530050.046

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.90461
Exp 36h0.52630.41
Exp 60h0.539050.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.13467
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.61480.3
transgenic ySAMdc/azygous control (breaker)1.344871
transgenic ySAMdc/azygous control (red)1.043121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.632420.065

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt6.429910.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.070660.096
Manapal/WT (break)2.239490.126
Manapal/WT (red)1.231631