Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.4.1.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.79225	0.427
27DAP/17DAP	0.88203	0.801
39DAP/27DAP	0.8545	0.537
41DAP/39DAP	0.55233	0.047
42DAP/41DAP	1.34413	0.722
43DAP/42DAP	0.92112	0.865
47DAP/43DAP	0.77607	0.41
52DAP/47DAP	1.13551	0.794
57DAP/52DAP	0.77711	0.867

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94533	0.159
17DAP/reference	0.88674	0.009
27DAP/reference	0.95843	0.395
39DAP/reference	0.91381	0.228
41DAP/reference	0.87781	0.049
42DAP/reference	1.12597	0.084
43DAP/reference	1.01314	0.928
47DAP/reference	1.12979	0.13
52DAP/reference	1.2287	0.186
57DAP/reference	1.38634	0.073

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.88779	0.363
27DAP/17DAP	0.96444	0.878
39DAP/27DAP	1.04426	0.691
41DAP/39DAP	1.02568	1
42DAP/41DAP	1.05877	0.836
43DAP/42DAP	1.05729	0.273
47DAP/43DAP	0.93101	0.395
52DAP/47DAP	0.79682	0.226
57DAP/52DAP	0.98654	0.813
57DAP/7DAP	0.92347	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00757	0.758
17DAP/reference	0.91733	0.192
27DAP/reference	0.93872	0.325
39DAP/reference	0.88847	0.146
41DAP/reference	1.06464	0.589
42DAP/reference	0.88933	0.222
43DAP/reference	0.99888	0.665
47DAP/reference	1.1103	0.525
52DAP/reference	0.90097	0.232
57DAP/reference	0.798	0.033

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05206	0.965
17DAP/reference	0.91827	0.223
27DAP/reference	1.2489	0.254
39DAP/reference	1.33143	0.128
41DAP/reference	1.55405	0.012
42DAP/reference	1.14549	0.195
43DAP/reference	1.01434	0.801
47DAP/reference	1.03828	0.589
52DAP/reference	1.18978	0.03
57DAP/reference	0.89933	0.226

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.01716	1
17DAP/reference	1.02574	0.886
27DAP/reference	0.82804	0.078
39DAP/reference	1.07007	1
41DAP/reference	0.89772	0.417
42DAP/reference	1.19144	0.51
43DAP/reference	1.2955	0.432
47DAP/reference	1.02521	1
52DAP/reference	0.78949	0.15
57DAP/reference	2.02471	0.044

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.0831	0.966
26DAP/20DAP	1.22584	0.464
34DAP/26DAP	1.15363	0.19
51DAP/34DAP	1.17794	0.352
52DAP/51DAP	0.90268	1
53DAP/52DAP	0.94254	0.772
55DAP/53DAP	0.85412	0.195
57DAP/55DAP	0.7486	0.197
62DAP/57DAP	0.94672	0.994
68DAP/62DAP	1.49748	0.056
68DAP/14DAP	1.94018	0.03

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.14485	0.954

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.3507	0.058
Mature Green Tomato/Ripe Tomato	1.5856	0.134
Immature Eggplant/Mature Eggplant	0.96024	0.651
Ripe Pepper/Ripe Tomato	1.20497	0.236
Mature Eggplant/Ripe Tomato	1.74906	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	1.19695	1
12-2/M82	0.91951
12-4/M82	0.91585	0.319
1-3/M82	N/A	N/A
2-1-1/M82	0.72089
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	1.14343
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	1.07971
4-3/M82	N/A	N/A
5-3/M82	1.03658	1
6-2/M82	1.00966
6-3/M82	N/A	N/A
7-1/M82	1.23746	0.539
7-2/M82	N/A	N/A
9-3-2/M82	1.08021

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.18609	0.365
IL2-6/WTpooled	1.38695	0.531
IL7-5/WTpooled	1.21593	1
IL7-3/WTpooled	0.93145	0.298
IL12-4/WTpooled	0.8752	1
IL1-4/WTpooled	1.10091	1
WT/WTpooled	1.05453	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.0602	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97821	1
DC3000/delta hrp 6h	0.841	0.915
DC3000/delta hrp 12h	1.00422	1
DC3000/delta hrp 24h	1.25661	0.074

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.29373	0.145
DC3000 delta B/DC3000 delta AB	0.99365	1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.02696	1
Exp 36h	1.1117	1
Exp 60h	1.18849	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.98919	1
Var 0h	1.01289	1
Var 12h I row2-row1	0.97378	0.948
Var 12h NI row2-row1	1.00855	1
Var 36h I row2-row1	1.16313	0.908
Var 36h NI row2-row1	1.13244	0.482
Var 60h I row2-row1	0.92279	0.439
Var 60h NI row2-row1	1.06756	1
Time course 0hI-0hNI	0.89744	0.16
Time course 12hI-12hNI	0.93946	0.47
Time course 36hI-36hNI	0.88704	0.05
Time course 60hI-60hNI	0.63331	0.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.92486	0.338
transgenic ySAMdc/azygous control (breaker)	1.16809	0.248
transgenic ySAMdc/azygous control (red)	1.06215	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.05295	0.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.0629	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.94526	1
Manapal/WT (break)	1.03258	1
Manapal/WT (red)	1.08382	1