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Expression of 1-1-6.4.10.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.881090.503
27DAP/17DAP0.792820.487
39DAP/27DAP1.190850.635
41DAP/39DAP0.815460.27
42DAP/41DAP1.018541
43DAP/42DAP0.953220.892
47DAP/43DAP1.326850.542
52DAP/47DAP1.034170.886
57DAP/52DAP0.978810.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.133070.154
17DAP/reference1.036550.74
27DAP/reference1.040570.623
39DAP/reference0.905270.121
41DAP/reference0.890450.114
42DAP/reference1.032131
43DAP/reference1.032330.866
47DAP/reference1.282050.009
52DAP/reference1.017240.991
57DAP/reference1.154650.249

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.841980.323
27DAP/17DAP1.49610.067
39DAP/27DAP1.165110.337
41DAP/39DAP1.055971
42DAP/41DAP1.047550.675
43DAP/42DAP1.163510.134
47DAP/43DAP0.976680.909
52DAP/47DAP0.879880.778
57DAP/52DAP1.060741
57DAP/7DAP0.828091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.217270.087
17DAP/reference0.955440.094
27DAP/reference1.101830.453
39DAP/reference1.273070.126
41DAP/reference1.162080.191
42DAP/reference1.180040.021
43DAP/reference1.269210.007
47DAP/reference1.297030.133
52DAP/reference1.138760.012
57DAP/reference1.147690.108

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.156220.254
17DAP/reference1.223750.21
27DAP/reference1.230030.153
39DAP/reference1.154480.08
41DAP/reference1.090270.944
42DAP/reference1.213160.061
43DAP/reference0.995240.692
47DAP/reference1.171010.247
52DAP/reference0.895520.171
57DAP/reference0.906460.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.141080.103
17DAP/reference1.049480.657
27DAP/reference1.009621
39DAP/reference1.011430.987
41DAP/reference1.081630.265
42DAP/reference1.029180.923
43DAP/reference1.118760.369
47DAP/reference1.126810.239
52DAP/reference1.057270.876
57DAP/reference1.013930.742

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.149611
26DAP/20DAP1.618850.109
34DAP/26DAP0.8890.861
51DAP/34DAP1.06930.775
52DAP/51DAP0.844330.151
53DAP/52DAP0.932840.776
55DAP/53DAP0.678520.062
57DAP/55DAP1.337280.376
62DAP/57DAP1.26020.393
68DAP/62DAP0.83010.464
68DAP/14DAP1.067870.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.291240.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.369090.058
Mature Green Tomato/Ripe Tomato0.991320.715
Immature Eggplant/Mature Eggplant0.852460.069
Ripe Pepper/Ripe Tomato1.169970.258
Mature Eggplant/Ripe Tomato0.981981

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.02731
1-1-2/M821.033631
12-2/M820.83481N/A
12-4/M820.907791
1-3/M821.683320.277
2-1-1/M821.017521
2-1/M820.883580.74
2-6/M820.844291
3-2/M820.961831
4-1-1/M821.029451
4-1/M822.27326N/A
4-3-2/M821.301720.246
4-3/M820.994241
5-3/M821.088931
6-2/M821.01542N/A
6-3/M820.957741
7-1/M821.238080.598
7-2/M821.209650.324
9-3-2/M821.13311

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.43368N/A
IL2-6/WTpooled0.74550.473
IL7-5/WTpooled0.10915N/A
IL7-3/WTpooled0.993081
IL12-4/WTpooled0.718230.566
IL1-4/WTpooled1.133080.426
WT/WTpooled0.939881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.984561

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.874330.941
DC3000/delta hrp 6h1.030690.95
DC3000/delta hrp 12h0.992591
DC3000/delta hrp 24h1.076440.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.6767N/A
DC3000 delta B/DC3000 delta AB1.23982N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.921531
Exp 36h0.906560.879
Exp 60h0.867830.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995641
Var 0h0.966651
Var 12h I row2-row10.951970.856
Var 12h NI row2-row10.926610.82
Var 36h I row2-row11.013181
Var 36h NI row2-row11.2191
Var 60h I row2-row10.961630.832
Var 60h NI row2-row10.871920.69
Time course 0hI-0hNI1.019290.852
Time course 12hI-12hNI0.970950.739
Time course 36hI-36hNI1.033080.28
Time course 60hI-60hNI1.016570.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.061230.541
transgenic ySAMdc/azygous control (breaker)1.364420.162
transgenic ySAMdc/azygous control (red)0.897461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.088780.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.57170.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.017541
Manapal/WT (break)0.964551
Manapal/WT (red)1.332060.164