Expression of 1-1-6.4.11.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74296 | 0.09 |
27DAP/17DAP | 1.35379 | 0.627 |
39DAP/27DAP | 2.35277 | 0.236 |
41DAP/39DAP | 1.27143 | 0.597 |
42DAP/41DAP | 0.47357 | 0.235 |
43DAP/42DAP | 0.90713 | 0.867 |
47DAP/43DAP | 0.91895 | 0.701 |
52DAP/47DAP | 2.01465 | 0.243 |
57DAP/52DAP | 0.53176 | 0.613 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06574 | 0.685 |
17DAP/reference | 0.96317 | 0.278 |
27DAP/reference | 1.15913 | 0.023 |
39DAP/reference | 0.92233 | 0.213 |
41DAP/reference | 1.0868 | 0.421 |
42DAP/reference | 1.16543 | 0.043 |
43DAP/reference | 0.98368 | 0.745 |
47DAP/reference | 0.96179 | 0.279 |
52DAP/reference | 1.05831 | 0.633 |
57DAP/reference | 1.14531 | 0.136 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04263 | 0.847 |
27DAP/17DAP | 0.97653 | 0.919 |
39DAP/27DAP | 1.15755 | 1 |
41DAP/39DAP | 0.9006 | 0.68 |
42DAP/41DAP | 0.92834 | 0.545 |
43DAP/42DAP | 1.00302 | 0.875 |
47DAP/43DAP | 0.97484 | 0.855 |
52DAP/47DAP | 2.03786 | 0.048 |
57DAP/52DAP | 1.89308 | 0.061 |
57DAP/7DAP | 1.17376 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59712 | 0.025 |
17DAP/reference | 1.36194 | 0.049 |
27DAP/reference | 1.4558 | 0.01 |
39DAP/reference | 2.22934 | 0.006 |
41DAP/reference | 1.61832 | 0.011 |
42DAP/reference | 2.00745 | 0.01 |
43DAP/reference | 1.67918 | 0.013 |
47DAP/reference | 1.34105 | 0.106 |
52DAP/reference | 1.4563 | 0.041 |
57DAP/reference | 1.49109 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97701 | 0.688 |
17DAP/reference | 0.98169 | 0.576 |
27DAP/reference | 1.51938 | 0.034 |
39DAP/reference | 1.49267 | 0.012 |
41DAP/reference | 1.16874 | 0.099 |
42DAP/reference | 1.23621 | 0.018 |
43DAP/reference | 1.07565 | 0.817 |
47DAP/reference | 1.18221 | 0.067 |
52DAP/reference | 1.06788 | 0.038 |
57DAP/reference | 1.11264 | 0.214 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28054 | 0.048 |
17DAP/reference | 1.10503 | 0.572 |
27DAP/reference | 1.53797 | 0.03 |
39DAP/reference | 1.71771 | 0.016 |
41DAP/reference | 1.23655 | 0.521 |
42DAP/reference | 1.2898 | 0.03 |
43DAP/reference | 1.21469 | 0.137 |
47DAP/reference | 1.10942 | 0.218 |
52DAP/reference | 1.31925 | 0.09 |
57DAP/reference | 1.20648 | 0.1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0537 | 1 |
26DAP/20DAP | 1.54073 | 0.581 |
34DAP/26DAP | 0.95461 | 0.991 |
51DAP/34DAP | 0.67047 | 0.112 |
52DAP/51DAP | 1.0399 | 0.954 |
53DAP/52DAP | 0.91797 | 0.783 |
55DAP/53DAP | 1.01944 | 0.964 |
57DAP/55DAP | 1.11534 | 0.969 |
62DAP/57DAP | 1.07747 | 1 |
68DAP/62DAP | 1.0906 | 1 |
68DAP/14DAP | 1.18879 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.37325 | 0.113 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.78933 | 0.343 |
Mature Green Tomato/Ripe Tomato | 1.43858 | 0.023 |
Immature Eggplant/Mature Eggplant | 1.14404 | 0.311 |
Ripe Pepper/Ripe Tomato | 0.47575 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.52717 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93255 | 0.883 |
1-1-2/M82 | 1.03044 | 1 |
12-2/M82 | 1.14514 | 1 |
12-4/M82 | 0.78428 | 0.619 |
1-3/M82 | 0.69149 | |
2-1-1/M82 | 0.73405 | 0.465 |
2-1/M82 | 1.03602 | 1 |
2-6/M82 | 0.93389 | 1 |
3-2/M82 | 1.03419 | 1 |
4-1-1/M82 | 0.91377 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.71494 | |
4-3/M82 | 0.72038 | 0.611 |
5-3/M82 | 0.91347 | 0.642 |
6-2/M82 | 0.90715 | |
6-3/M82 | 1.06834 | 1 |
7-1/M82 | 0.97201 | 0.803 |
7-2/M82 | 0.92377 | 0.881 |
9-3-2/M82 | 0.8569 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.18803 | |
IL2-6/WTpooled | 1.13915 | 0.46 |
IL7-5/WTpooled | 0.7153 | 0.427 |
IL7-3/WTpooled | 1.15019 | 1 |
IL12-4/WTpooled | 0.93966 | 0.71 |
IL1-4/WTpooled | 1.05326 | 1 |
WT/WTpooled | 0.94362 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.56543 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07897 | 0.774 |
DC3000/delta hrp 6h | 1.03104 | 1 |
DC3000/delta hrp 12h | 0.80269 | 1 |
DC3000/delta hrp 24h | 1.10745 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15335 | 1 |
Exp 36h | 1.2291 | 1 |
Exp 60h | 1.35526 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.91645 | 1 |
Var 0h | 0.94579 | 1 |
Var 12h I row2-row1 | 1.04113 | 1 |
Var 12h NI row2-row1 | 0.77024 | 0.82 |
Var 36h I row2-row1 | 0.95528 | 1 |
Var 36h NI row2-row1 | 3.0706 | 1 |
Var 60h I row2-row1 | 1.28836 | |
Var 60h NI row2-row1 | 0.55037 | |
Time course 0hI-0hNI | 0.87154 | 0.485 |
Time course 12hI-12hNI | 1.02155 | 0.885 |
Time course 36hI-36hNI | 1.2714 | 0.355 |
Time course 60hI-60hNI | 1.35224 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90287 | 0.26 |
transgenic ySAMdc/azygous control (breaker) | 0.67115 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.08965 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88515 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.37845 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.69719 | 0.172 |
Manapal/WT (break) | 0.82511 | 1 |
Manapal/WT (red) | 0.91725 | 0.36 |
|
|