Expression of 1-1-6.4.11.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.742960.09
27DAP/17DAP1.353790.627
39DAP/27DAP2.352770.236
41DAP/39DAP1.271430.597
42DAP/41DAP0.473570.235
43DAP/42DAP0.907130.867
47DAP/43DAP0.918950.701
52DAP/47DAP2.014650.243
57DAP/52DAP0.531760.613

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.065740.685
17DAP/reference0.963170.278
27DAP/reference1.159130.023
39DAP/reference0.922330.213
41DAP/reference1.08680.421
42DAP/reference1.165430.043
43DAP/reference0.983680.745
47DAP/reference0.961790.279
52DAP/reference1.058310.633
57DAP/reference1.145310.136

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042630.847
27DAP/17DAP0.976530.919
39DAP/27DAP1.157551
41DAP/39DAP0.90060.68
42DAP/41DAP0.928340.545
43DAP/42DAP1.003020.875
47DAP/43DAP0.974840.855
52DAP/47DAP2.037860.048
57DAP/52DAP1.893080.061
57DAP/7DAP1.173761

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.597120.025
17DAP/reference1.361940.049
27DAP/reference1.45580.01
39DAP/reference2.229340.006
41DAP/reference1.618320.011
42DAP/reference2.007450.01
43DAP/reference1.679180.013
47DAP/reference1.341050.106
52DAP/reference1.45630.041
57DAP/reference1.491090.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.977010.688
17DAP/reference0.981690.576
27DAP/reference1.519380.034
39DAP/reference1.492670.012
41DAP/reference1.168740.099
42DAP/reference1.236210.018
43DAP/reference1.075650.817
47DAP/reference1.182210.067
52DAP/reference1.067880.038
57DAP/reference1.112640.214

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.280540.048
17DAP/reference1.105030.572
27DAP/reference1.537970.03
39DAP/reference1.717710.016
41DAP/reference1.236550.521
42DAP/reference1.28980.03
43DAP/reference1.214690.137
47DAP/reference1.109420.218
52DAP/reference1.319250.09
57DAP/reference1.206480.1

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.05371
26DAP/20DAP1.540730.581
34DAP/26DAP0.954610.991
51DAP/34DAP0.670470.112
52DAP/51DAP1.03990.954
53DAP/52DAP0.917970.783
55DAP/53DAP1.019440.964
57DAP/55DAP1.115340.969
62DAP/57DAP1.077471
68DAP/62DAP1.09061
68DAP/14DAP1.188790.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.373250.113

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.789330.343
Mature Green Tomato/Ripe Tomato1.438580.023
Immature Eggplant/Mature Eggplant1.144040.311
Ripe Pepper/Ripe Tomato0.475750.224
Mature Eggplant/Ripe Tomato0.527171

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.932550.883
1-1-2/M821.030441
12-2/M821.145141
12-4/M820.784280.619
1-3/M820.69149
2-1-1/M820.734050.465
2-1/M821.036021
2-6/M820.933891
3-2/M821.034191
4-1-1/M820.913771
4-1/M82N/AN/A
4-3-2/M820.71494
4-3/M820.720380.611
5-3/M820.913470.642
6-2/M820.90715
6-3/M821.068341
7-1/M820.972010.803
7-2/M820.923770.881
9-3-2/M820.85691

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.18803
IL2-6/WTpooled1.139150.46
IL7-5/WTpooled0.71530.427
IL7-3/WTpooled1.150191
IL12-4/WTpooled0.939660.71
IL1-4/WTpooled1.053261
WT/WTpooled0.943621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.565430.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.078970.774
DC3000/delta hrp 6h1.031041
DC3000/delta hrp 12h0.802691
DC3000/delta hrp 24h1.107450.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.153351
Exp 36h1.22911
Exp 60h1.355260.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.916451
Var 0h0.945791
Var 12h I row2-row11.041131
Var 12h NI row2-row10.770240.82
Var 36h I row2-row10.955281
Var 36h NI row2-row13.07061
Var 60h I row2-row11.28836
Var 60h NI row2-row10.55037
Time course 0hI-0hNI0.871540.485
Time course 12hI-12hNI1.021550.885
Time course 36hI-36hNI1.27140.355
Time course 60hI-60hNI1.352240.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.902870.26
transgenic ySAMdc/azygous control (breaker)0.671150.131
transgenic ySAMdc/azygous control (red)1.089650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.885150.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.378450.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.697190.172
Manapal/WT (break)0.825111
Manapal/WT (red)0.917250.36