Expression of 1-1-6.4.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.391260.094
27DAP/17DAP1.706960.761
39DAP/27DAP0.7640.487
41DAP/39DAP0.896160.563
42DAP/41DAP1.037821
43DAP/42DAP1.183740.894
47DAP/43DAP1.083120.825
52DAP/47DAP1.571690.626
57DAP/52DAP0.703240.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.040020.735
17DAP/reference0.987710.777
27DAP/reference1.077640.587
39DAP/reference1.108430.343
41DAP/reference1.111640.265
42DAP/reference1.10850.338
43DAP/reference1.229290.03
47DAP/reference1.631790.001
52DAP/reference1.020111
57DAP/reference1.158190.057

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.91226
27DAP/17DAPN/AN/A
39DAP/27DAP1.96937
41DAP/39DAPN/AN/A
42DAP/41DAP1.085940.865
43DAP/42DAP0.54796
47DAP/43DAP0.47203
52DAP/47DAP0.86991
57DAP/52DAP1.007220.818
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.297850.564
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference0.89883
42DAP/reference1.79066
43DAP/reference1.37557
47DAP/reference1.154380.158
52DAP/referenceN/AN/A
57DAP/reference1.0595

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952910.564
17DAP/reference1.134620.385
27DAP/reference1.09430.639
39DAP/reference1.007251
41DAP/reference0.954710.357
42DAP/reference0.95590.355
43DAP/reference1.008250.846
47DAP/reference1.046410.816
52DAP/reference0.641240.004
57DAP/reference0.994920.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.354020.172
17DAP/reference0.940180.647
27DAP/reference0.88974
39DAP/reference0.665290.019
41DAP/reference0.75653
42DAP/reference0.723810.02
43DAP/reference0.866060.125
47DAP/reference1.417180.017
52DAP/reference1.344520.067
57DAP/reference2.012490.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.176930.966
26DAP/20DAP0.666231
34DAP/26DAP1.170141
51DAP/34DAP2.606120.84
52DAP/51DAP3.92913
53DAP/52DAP0.814040.758
55DAP/53DAP1.191140.855
57DAP/55DAP0.543610.014
62DAP/57DAP0.760620.162
68DAP/62DAP3.988940.95
68DAP/14DAP0.926741

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.645910.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.715330.189
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.914490.05
Ripe Pepper/Ripe Tomato0.724760.224
Mature Eggplant/Ripe Tomato0.66782

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.880171
IL2-6/WTpooled1.002911
IL7-5/WTpooled1.063320.792
IL7-3/WTpooled0.968050.418
IL12-4/WTpooled0.855290.71
IL1-4/WTpooled1.059411
WT/WTpooled0.975711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.03211
DC3000/delta hrp 12h1.227681
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.915580.332
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.975090.324
transgenic ySAMdc/azygous control (breaker)0.947730.49
transgenic ySAMdc/azygous control (red)0.960661

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.12750.066

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.914450.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.776091
Manapal/WT (break)0.820080.333
Manapal/WT (red)N/AN/A