Expression of 1-1-6.4.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.39126 | 0.094 |
27DAP/17DAP | 1.70696 | 0.761 |
39DAP/27DAP | 0.764 | 0.487 |
41DAP/39DAP | 0.89616 | 0.563 |
42DAP/41DAP | 1.03782 | 1 |
43DAP/42DAP | 1.18374 | 0.894 |
47DAP/43DAP | 1.08312 | 0.825 |
52DAP/47DAP | 1.57169 | 0.626 |
57DAP/52DAP | 0.70324 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04002 | 0.735 |
17DAP/reference | 0.98771 | 0.777 |
27DAP/reference | 1.07764 | 0.587 |
39DAP/reference | 1.10843 | 0.343 |
41DAP/reference | 1.11164 | 0.265 |
42DAP/reference | 1.1085 | 0.338 |
43DAP/reference | 1.22929 | 0.03 |
47DAP/reference | 1.63179 | 0.001 |
52DAP/reference | 1.02011 | 1 |
57DAP/reference | 1.15819 | 0.057 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91226 | |
27DAP/17DAP | N/A | N/A |
39DAP/27DAP | 1.96937 | |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 1.08594 | 0.865 |
43DAP/42DAP | 0.54796 | |
47DAP/43DAP | 0.47203 | |
52DAP/47DAP | 0.86991 | |
57DAP/52DAP | 1.00722 | 0.818 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29785 | 0.564 |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.89883 | |
42DAP/reference | 1.79066 | |
43DAP/reference | 1.37557 | |
47DAP/reference | 1.15438 | 0.158 |
52DAP/reference | N/A | N/A |
57DAP/reference | 1.0595 | |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95291 | 0.564 |
17DAP/reference | 1.13462 | 0.385 |
27DAP/reference | 1.0943 | 0.639 |
39DAP/reference | 1.00725 | 1 |
41DAP/reference | 0.95471 | 0.357 |
42DAP/reference | 0.9559 | 0.355 |
43DAP/reference | 1.00825 | 0.846 |
47DAP/reference | 1.04641 | 0.816 |
52DAP/reference | 0.64124 | 0.004 |
57DAP/reference | 0.99492 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35402 | 0.172 |
17DAP/reference | 0.94018 | 0.647 |
27DAP/reference | 0.88974 | |
39DAP/reference | 0.66529 | 0.019 |
41DAP/reference | 0.75653 | |
42DAP/reference | 0.72381 | 0.02 |
43DAP/reference | 0.86606 | 0.125 |
47DAP/reference | 1.41718 | 0.017 |
52DAP/reference | 1.34452 | 0.067 |
57DAP/reference | 2.01249 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17693 | 0.966 |
26DAP/20DAP | 0.66623 | 1 |
34DAP/26DAP | 1.17014 | 1 |
51DAP/34DAP | 2.60612 | 0.84 |
52DAP/51DAP | 3.92913 | |
53DAP/52DAP | 0.81404 | 0.758 |
55DAP/53DAP | 1.19114 | 0.855 |
57DAP/55DAP | 0.54361 | 0.014 |
62DAP/57DAP | 0.76062 | 0.162 |
68DAP/62DAP | 3.98894 | 0.95 |
68DAP/14DAP | 0.92674 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.64591 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.71533 | 0.189 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.91449 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.72476 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.66782 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88017 | 1 |
IL2-6/WTpooled | 1.00291 | 1 |
IL7-5/WTpooled | 1.06332 | 0.792 |
IL7-3/WTpooled | 0.96805 | 0.418 |
IL12-4/WTpooled | 0.85529 | 0.71 |
IL1-4/WTpooled | 1.05941 | 1 |
WT/WTpooled | 0.97571 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.0321 | 1 |
DC3000/delta hrp 12h | 1.22768 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.91558 | 0.332 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97509 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 0.94773 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.96066 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.1275 | 0.066 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91445 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77609 | 1 |
Manapal/WT (break) | 0.82008 | 0.333 |
Manapal/WT (red) | N/A | N/A |
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