Expression of 1-1-6.4.11.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19764 | 0.709 |
27DAP/17DAP | 0.81956 | 0.491 |
39DAP/27DAP | 0.84931 | 0.487 |
41DAP/39DAP | 1.70931 | 0.293 |
42DAP/41DAP | 1.30081 | 1 |
43DAP/42DAP | 0.83119 | 0.713 |
47DAP/43DAP | 0.84209 | 0.473 |
52DAP/47DAP | 1.95098 | 0.23 |
57DAP/52DAP | 0.82737 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93584 | 0.205 |
17DAP/reference | 1.06274 | 0.178 |
27DAP/reference | 1.04355 | 0.435 |
39DAP/reference | 0.99851 | 0.921 |
41DAP/reference | 1.03856 | 0.552 |
42DAP/reference | 0.90345 | 0.056 |
43DAP/reference | 1.00674 | 0.942 |
47DAP/reference | 0.91604 | 0.106 |
52DAP/reference | 0.64868 | 0.021 |
57DAP/reference | 0.76489 | 0.049 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80063 | 0.251 |
27DAP/17DAP | 1.03508 | 0.973 |
39DAP/27DAP | 1.2746 | 0.331 |
41DAP/39DAP | 0.88549 | 0.645 |
42DAP/41DAP | 1.08347 | 0.852 |
43DAP/42DAP | 1.14604 | 0.413 |
47DAP/43DAP | 0.95846 | 0.833 |
52DAP/47DAP | 0.92292 | 0.686 |
57DAP/52DAP | 0.92983 | 0.32 |
57DAP/7DAP | 1.00973 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76328 | 0.067 |
17DAP/reference | 0.77621 | 0.013 |
27DAP/reference | 0.80005 | 0.015 |
39DAP/reference | 0.763 | 0.011 |
41DAP/reference | 0.75079 | 0.02 |
42DAP/reference | 0.74707 | 0.011 |
43DAP/reference | 0.67378 | 0.012 |
47DAP/reference | 0.73631 | 0.044 |
52DAP/reference | 0.62766 | 0.011 |
57DAP/reference | 0.89783 | 0.207 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07602 | 0.531 |
17DAP/reference | 0.99612 | 0.747 |
27DAP/reference | 0.87515 | 0.22 |
39DAP/reference | 0.83514 | 0.091 |
41DAP/reference | 0.82346 | 0.071 |
42DAP/reference | 0.86588 | 0.121 |
43DAP/reference | 1.16501 | 0.199 |
47DAP/reference | 1.0366 | 0.658 |
52DAP/reference | 0.95278 | 0.28 |
57DAP/reference | 1.27625 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8147 | 0.098 |
17DAP/reference | 0.90682 | 0.286 |
27DAP/reference | 0.74453 | 0.031 |
39DAP/reference | 0.71322 | 0.019 |
41DAP/reference | 0.8113 | 0.019 |
42DAP/reference | 0.69344 | 0.016 |
43DAP/reference | 0.73331 | 0.022 |
47DAP/reference | 0.9312 | 0.357 |
52DAP/reference | 0.90125 | 0.368 |
57DAP/reference | 0.55029 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03987 | 0.966 |
26DAP/20DAP | 0.83609 | 0.512 |
34DAP/26DAP | 1.10933 | 1 |
51DAP/34DAP | 1.08168 | 0.759 |
52DAP/51DAP | 0.951 | 1 |
53DAP/52DAP | 0.94489 | 0.663 |
55DAP/53DAP | 1.1571 | 0.429 |
57DAP/55DAP | 1.11038 | 0.935 |
62DAP/57DAP | 1.05543 | 0.935 |
68DAP/62DAP | 1.00888 | 0.885 |
68DAP/14DAP | 0.79664 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89774 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.37553 | 0.437 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.82991 | |
Mature Eggplant/Ripe Tomato | 1.83979 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03861 | 1 |
1-1-2/M82 | 1.02012 | 1 |
12-2/M82 | 1.07148 | 1 |
12-4/M82 | 0.90608 | 1 |
1-3/M82 | 0.89839 | 0.441 |
2-1-1/M82 | 0.79321 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.10452 | 0.695 |
3-2/M82 | 0.95917 | 0.752 |
4-1-1/M82 | 1.07877 | 1 |
4-1/M82 | 0.84259 | 1 |
4-3-2/M82 | 0.79144 | 0.698 |
4-3/M82 | 0.88922 | 1 |
5-3/M82 | 0.95816 | 1 |
6-2/M82 | 0.8424 | |
6-3/M82 | 0.9343 | |
7-1/M82 | 1.11924 | |
7-2/M82 | 0.94586 | 1 |
9-3-2/M82 | 0.74558 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81843 | |
IL2-6/WTpooled | 1.07478 | 1 |
IL7-5/WTpooled | 3.00236 | |
IL7-3/WTpooled | 0.88619 | 0.418 |
IL12-4/WTpooled | 1.29147 | 0.546 |
IL1-4/WTpooled | 0.98176 | 0.834 |
WT/WTpooled | 0.98614 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06105 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05563 | 0.692 |
DC3000/delta hrp 6h | 1.03051 | 0.95 |
DC3000/delta hrp 12h | 1.3792 | 1 |
DC3000/delta hrp 24h | 1.01779 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.96237 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.08655 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01889 | 1 |
Var 0h | 1.07309 | 0.782 |
Var 12h I row2-row1 | 0.96957 | 0.948 |
Var 12h NI row2-row1 | 0.67209 | 0.546 |
Var 36h I row2-row1 | 0.95035 | 1 |
Var 36h NI row2-row1 | 1.24828 | 1 |
Var 60h I row2-row1 | 1.41624 | 0.562 |
Var 60h NI row2-row1 | 1.18432 | 0.904 |
Time course 0hI-0hNI | 1.15213 | 0.451 |
Time course 12hI-12hNI | 1.03758 | 0.785 |
Time course 36hI-36hNI | 0.96994 | 0.46 |
Time course 60hI-60hNI | 1.16522 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97901 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.10278 | 1 |
transgenic ySAMdc/azygous control (red) | 0.95721 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98654 | 0.242 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0484 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.23217 | 0.307 |
Manapal/WT (break) | 1.223 | 1 |
Manapal/WT (red) | N/A | N/A |
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