Expression of 1-1-6.4.11.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.197640.709
27DAP/17DAP0.819560.491
39DAP/27DAP0.849310.487
41DAP/39DAP1.709310.293
42DAP/41DAP1.300811
43DAP/42DAP0.831190.713
47DAP/43DAP0.842090.473
52DAP/47DAP1.950980.23
57DAP/52DAP0.827370.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.935840.205
17DAP/reference1.062740.178
27DAP/reference1.043550.435
39DAP/reference0.998510.921
41DAP/reference1.038560.552
42DAP/reference0.903450.056
43DAP/reference1.006740.942
47DAP/reference0.916040.106
52DAP/reference0.648680.021
57DAP/reference0.764890.049

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.800630.251
27DAP/17DAP1.035080.973
39DAP/27DAP1.27460.331
41DAP/39DAP0.885490.645
42DAP/41DAP1.083470.852
43DAP/42DAP1.146040.413
47DAP/43DAP0.958460.833
52DAP/47DAP0.922920.686
57DAP/52DAP0.929830.32
57DAP/7DAP1.009731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763280.067
17DAP/reference0.776210.013
27DAP/reference0.800050.015
39DAP/reference0.7630.011
41DAP/reference0.750790.02
42DAP/reference0.747070.011
43DAP/reference0.673780.012
47DAP/reference0.736310.044
52DAP/reference0.627660.011
57DAP/reference0.897830.207

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076020.531
17DAP/reference0.996120.747
27DAP/reference0.875150.22
39DAP/reference0.835140.091
41DAP/reference0.823460.071
42DAP/reference0.865880.121
43DAP/reference1.165010.199
47DAP/reference1.03660.658
52DAP/reference0.952780.28
57DAP/reference1.276250.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.81470.098
17DAP/reference0.906820.286
27DAP/reference0.744530.031
39DAP/reference0.713220.019
41DAP/reference0.81130.019
42DAP/reference0.693440.016
43DAP/reference0.733310.022
47DAP/reference0.93120.357
52DAP/reference0.901250.368
57DAP/reference0.550290.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.039870.966
26DAP/20DAP0.836090.512
34DAP/26DAP1.109331
51DAP/34DAP1.081680.759
52DAP/51DAP0.9511
53DAP/52DAP0.944890.663
55DAP/53DAP1.15710.429
57DAP/55DAP1.110380.935
62DAP/57DAP1.055430.935
68DAP/62DAP1.008880.885
68DAP/14DAP0.796641

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.897740.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.375530.437
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.82991
Mature Eggplant/Ripe Tomato1.839790.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.038611
1-1-2/M821.020121
12-2/M821.071481
12-4/M820.906081
1-3/M820.898390.441
2-1-1/M820.79321
2-1/M82N/AN/A
2-6/M821.104520.695
3-2/M820.959170.752
4-1-1/M821.078771
4-1/M820.842591
4-3-2/M820.791440.698
4-3/M820.889221
5-3/M820.958161
6-2/M820.8424
6-3/M820.9343
7-1/M821.11924
7-2/M820.945861
9-3-2/M820.745580.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.81843
IL2-6/WTpooled1.074781
IL7-5/WTpooled3.00236
IL7-3/WTpooled0.886190.418
IL12-4/WTpooled1.291470.546
IL1-4/WTpooled0.981760.834
WT/WTpooled0.986141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.061051

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.055630.692
DC3000/delta hrp 6h1.030510.95
DC3000/delta hrp 12h1.37921
DC3000/delta hrp 24h1.017790.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.96237

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.086550.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018891
Var 0h1.073090.782
Var 12h I row2-row10.969570.948
Var 12h NI row2-row10.672090.546
Var 36h I row2-row10.950351
Var 36h NI row2-row11.248281
Var 60h I row2-row11.416240.562
Var 60h NI row2-row11.184320.904
Time course 0hI-0hNI1.152130.451
Time course 12hI-12hNI1.037580.785
Time course 36hI-36hNI0.969940.46
Time course 60hI-60hNI1.165220.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.979010.662
transgenic ySAMdc/azygous control (breaker)1.102781
transgenic ySAMdc/azygous control (red)0.957211

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986540.242

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.04841

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.232170.307
Manapal/WT (break)1.2231
Manapal/WT (red)N/AN/A