Expression of 1-1-6.4.12.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.020410.83
27DAP/17DAP1.13911
39DAP/27DAP1.720570.553
41DAP/39DAP1.133310.344
42DAP/41DAP2.006250.151
43DAP/42DAP1.002630.932
47DAP/43DAP0.969190.828
52DAP/47DAP1.151360.982
57DAP/52DAP1.064921

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.989250.645
17DAP/reference0.795220.008
27DAP/reference0.930390.223
39DAP/reference0.972680.487
41DAP/reference0.840120.039
42DAP/reference1.124590.013
43DAP/reference1.070270.325
47DAP/reference1.272850.001
52DAP/reference1.559920.007
57DAP/reference1.3140.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.223160.482
27DAP/17DAP1.03571
39DAP/27DAP1.195360.224
41DAP/39DAP0.748020.096
42DAP/41DAP1.155940.234
43DAP/42DAP1.257350.112
47DAP/43DAP0.985810.928
52DAP/47DAP0.98620.925
57DAP/52DAP1.150340.393
57DAP/7DAP1.015431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.817560.16
17DAP/reference1.740680.006
27DAP/reference1.379010.01
39DAP/reference1.126720.222
41DAP/reference1.428950.015
42DAP/reference1.454330.059
43DAP/reference1.175780.079
47DAP/reference1.077290.324
52DAP/reference1.320870.105
57DAP/reference1.033150.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.993310.869
17DAP/reference1.058220.33
27DAP/reference1.095940.419
39DAP/reference1.195540.194
41DAP/reference1.262590.016
42DAP/reference1.230520.022
43DAP/reference0.960310.486
47DAP/reference1.072260.081
52DAP/reference1.052860.279
57DAP/reference0.97960.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.786770.034
17DAP/reference1.271020.503
27DAP/reference1.245980.056
39DAP/reference1.393540.011
41DAP/reference1.128720.12
42DAP/reference1.132720.433
43DAP/reference1.271340.145
47DAP/reference1.399640.011
52DAP/reference1.396870.083
57DAP/reference2.184990.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.094270.966
26DAP/20DAP1.070591
34DAP/26DAP1.200411
51DAP/34DAP1.430270.232
52DAP/51DAP0.93991
53DAP/52DAP1.067720.783
55DAP/53DAP0.982920.796
57DAP/55DAP1.201690.955
62DAP/57DAP0.760720.028
68DAP/62DAP1.376410.345
68DAP/14DAP1.846950.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.423350.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.557690.111
Mature Green Tomato/Ripe Tomato1.00780.898
Immature Eggplant/Mature Eggplant1.075120.321
Ripe Pepper/Ripe Tomato0.511710.224
Mature Eggplant/Ripe Tomato0.19762

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.48369
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.0497
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.10155

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.200210.277
IL2-6/WTpooled0.848330.473
IL7-5/WTpooled0.935971
IL7-3/WTpooled1.22841
IL12-4/WTpooled1.135760.737
IL1-4/WTpooled1.12011
WT/WTpooled0.969751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.794480.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.33990.823
DC3000/delta hrp 6h1.044311
DC3000/delta hrp 12h1.072221
DC3000/delta hrp 24h0.747160.473

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.972731
DC3000 delta B/DC3000 delta AB1.00691

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.21161
Exp 36h1.09990.693
Exp 60h1.24170.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.971411
Var 0h1.036311
Var 12h I row2-row10.956970.627
Var 12h NI row2-row11.087981
Var 36h I row2-row11.220650.339
Var 36h NI row2-row10.975430.852
Var 60h I row2-row10.889890.582
Var 60h NI row2-row11.006871
Time course 0hI-0hNI0.930310.265
Time course 12hI-12hNI0.95770.535
Time course 36hI-36hNI1.007440.768
Time course 60hI-60hNI0.764670.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.131270.455
transgenic ySAMdc/azygous control (breaker)0.664710.15
transgenic ySAMdc/azygous control (red)0.990621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.0220.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.776550.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.269090.086
Manapal/WT (break)1.188130.381
Manapal/WT (red)1.348330.413