Expression of 1-1-6.4.12.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02041 | 0.83 |
27DAP/17DAP | 1.1391 | 1 |
39DAP/27DAP | 1.72057 | 0.553 |
41DAP/39DAP | 1.13331 | 0.344 |
42DAP/41DAP | 2.00625 | 0.151 |
43DAP/42DAP | 1.00263 | 0.932 |
47DAP/43DAP | 0.96919 | 0.828 |
52DAP/47DAP | 1.15136 | 0.982 |
57DAP/52DAP | 1.06492 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98925 | 0.645 |
17DAP/reference | 0.79522 | 0.008 |
27DAP/reference | 0.93039 | 0.223 |
39DAP/reference | 0.97268 | 0.487 |
41DAP/reference | 0.84012 | 0.039 |
42DAP/reference | 1.12459 | 0.013 |
43DAP/reference | 1.07027 | 0.325 |
47DAP/reference | 1.27285 | 0.001 |
52DAP/reference | 1.55992 | 0.007 |
57DAP/reference | 1.314 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22316 | 0.482 |
27DAP/17DAP | 1.0357 | 1 |
39DAP/27DAP | 1.19536 | 0.224 |
41DAP/39DAP | 0.74802 | 0.096 |
42DAP/41DAP | 1.15594 | 0.234 |
43DAP/42DAP | 1.25735 | 0.112 |
47DAP/43DAP | 0.98581 | 0.928 |
52DAP/47DAP | 0.9862 | 0.925 |
57DAP/52DAP | 1.15034 | 0.393 |
57DAP/7DAP | 1.01543 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.81756 | 0.16 |
17DAP/reference | 1.74068 | 0.006 |
27DAP/reference | 1.37901 | 0.01 |
39DAP/reference | 1.12672 | 0.222 |
41DAP/reference | 1.42895 | 0.015 |
42DAP/reference | 1.45433 | 0.059 |
43DAP/reference | 1.17578 | 0.079 |
47DAP/reference | 1.07729 | 0.324 |
52DAP/reference | 1.32087 | 0.105 |
57DAP/reference | 1.03315 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99331 | 0.869 |
17DAP/reference | 1.05822 | 0.33 |
27DAP/reference | 1.09594 | 0.419 |
39DAP/reference | 1.19554 | 0.194 |
41DAP/reference | 1.26259 | 0.016 |
42DAP/reference | 1.23052 | 0.022 |
43DAP/reference | 0.96031 | 0.486 |
47DAP/reference | 1.07226 | 0.081 |
52DAP/reference | 1.05286 | 0.279 |
57DAP/reference | 0.9796 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.78677 | 0.034 |
17DAP/reference | 1.27102 | 0.503 |
27DAP/reference | 1.24598 | 0.056 |
39DAP/reference | 1.39354 | 0.011 |
41DAP/reference | 1.12872 | 0.12 |
42DAP/reference | 1.13272 | 0.433 |
43DAP/reference | 1.27134 | 0.145 |
47DAP/reference | 1.39964 | 0.011 |
52DAP/reference | 1.39687 | 0.083 |
57DAP/reference | 2.18499 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09427 | 0.966 |
26DAP/20DAP | 1.07059 | 1 |
34DAP/26DAP | 1.20041 | 1 |
51DAP/34DAP | 1.43027 | 0.232 |
52DAP/51DAP | 0.9399 | 1 |
53DAP/52DAP | 1.06772 | 0.783 |
55DAP/53DAP | 0.98292 | 0.796 |
57DAP/55DAP | 1.20169 | 0.955 |
62DAP/57DAP | 0.76072 | 0.028 |
68DAP/62DAP | 1.37641 | 0.345 |
68DAP/14DAP | 1.84695 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.42335 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.55769 | 0.111 |
Mature Green Tomato/Ripe Tomato | 1.0078 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.07512 | 0.321 |
Ripe Pepper/Ripe Tomato | 0.51171 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.19762 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.48369 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.0497 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.10155 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.20021 | 0.277 |
IL2-6/WTpooled | 0.84833 | 0.473 |
IL7-5/WTpooled | 0.93597 | 1 |
IL7-3/WTpooled | 1.2284 | 1 |
IL12-4/WTpooled | 1.13576 | 0.737 |
IL1-4/WTpooled | 1.1201 | 1 |
WT/WTpooled | 0.96975 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79448 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.3399 | 0.823 |
DC3000/delta hrp 6h | 1.04431 | 1 |
DC3000/delta hrp 12h | 1.07222 | 1 |
DC3000/delta hrp 24h | 0.74716 | 0.473 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97273 | 1 |
DC3000 delta B/DC3000 delta AB | 1.0069 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.2116 | 1 |
Exp 36h | 1.0999 | 0.693 |
Exp 60h | 1.2417 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97141 | 1 |
Var 0h | 1.03631 | 1 |
Var 12h I row2-row1 | 0.95697 | 0.627 |
Var 12h NI row2-row1 | 1.08798 | 1 |
Var 36h I row2-row1 | 1.22065 | 0.339 |
Var 36h NI row2-row1 | 0.97543 | 0.852 |
Var 60h I row2-row1 | 0.88989 | 0.582 |
Var 60h NI row2-row1 | 1.00687 | 1 |
Time course 0hI-0hNI | 0.93031 | 0.265 |
Time course 12hI-12hNI | 0.9577 | 0.535 |
Time course 36hI-36hNI | 1.00744 | 0.768 |
Time course 60hI-60hNI | 0.76467 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13127 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 0.66471 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.99062 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.022 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77655 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26909 | 0.086 |
Manapal/WT (break) | 1.18813 | 0.381 |
Manapal/WT (red) | 1.34833 | 0.413 |
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