Expression of 1-1-6.4.13.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91787 | 0.61 |
27DAP/17DAP | 0.86645 | 0.749 |
39DAP/27DAP | 0.82693 | 0.507 |
41DAP/39DAP | 1.26991 | 0.468 |
42DAP/41DAP | 1.01958 | 1 |
43DAP/42DAP | 0.88213 | 0.827 |
47DAP/43DAP | 1.01802 | 1 |
52DAP/47DAP | 0.95564 | 0.865 |
57DAP/52DAP | 1.27363 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19547 | 0.11 |
17DAP/reference | 1.10862 | 0.178 |
27DAP/reference | 1.01087 | 0.996 |
39DAP/reference | 1.08179 | 0.157 |
41DAP/reference | 1.12336 | 0.03 |
42DAP/reference | 0.9634 | 0.259 |
43DAP/reference | 1.00709 | 0.957 |
47DAP/reference | 0.91714 | 0.174 |
52DAP/reference | 0.84463 | 0.048 |
57DAP/reference | 0.87929 | 0.112 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.59522 | 0.055 |
27DAP/17DAP | 0.93804 | 0.821 |
39DAP/27DAP | 1.23825 | 0.383 |
41DAP/39DAP | 1.29098 | 0.59 |
42DAP/41DAP | 1.04121 | 1 |
43DAP/42DAP | 1.31249 | 0.034 |
47DAP/43DAP | 0.99472 | 0.977 |
52DAP/47DAP | 1.06707 | 0.756 |
57DAP/52DAP | 1.11841 | 0.533 |
57DAP/7DAP | 1.07937 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13449 | 0.257 |
17DAP/reference | 1.43744 | 0.006 |
27DAP/reference | 1.28351 | 0.011 |
39DAP/reference | 1.49994 | 0.009 |
41DAP/reference | 1.77173 | 0.011 |
42DAP/reference | 1.6329 | 0.009 |
43DAP/reference | 1.70767 | 0.007 |
47DAP/reference | 1.11178 | 0.604 |
52DAP/reference | 1.1998 | 0.098 |
57DAP/reference | 1.17561 | 0.198 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97942 | 0.72 |
17DAP/reference | 1.06286 | 0.658 |
27DAP/reference | 0.91784 | 0.257 |
39DAP/reference | 0.91279 | 0.243 |
41DAP/reference | 0.99509 | 0.615 |
42DAP/reference | 0.99346 | 0.655 |
43DAP/reference | 1.13349 | 0.526 |
47DAP/reference | 1.10458 | 0.124 |
52DAP/reference | 1.05375 | 0.882 |
57DAP/reference | 1.15598 | 0.252 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18927 | 0.036 |
17DAP/reference | 1.13101 | 0.405 |
27DAP/reference | 1.46044 | 0.022 |
39DAP/reference | 1.33952 | 0.008 |
41DAP/reference | 1.35972 | 0.008 |
42DAP/reference | 1.328 | 0.142 |
43DAP/reference | 1.16353 | 0.445 |
47DAP/reference | 1.00594 | 0.731 |
52DAP/reference | 1.31415 | 0.312 |
57DAP/reference | 0.88265 | 0.221 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94596 | 1 |
26DAP/20DAP | 1.00326 | 1 |
34DAP/26DAP | 0.99332 | 0.988 |
51DAP/34DAP | 0.91077 | 0.532 |
52DAP/51DAP | 1.35116 | 0.616 |
53DAP/52DAP | 1.00796 | 1 |
55DAP/53DAP | 3.46119 | 0.589 |
57DAP/55DAP | 1.11262 | 0.779 |
62DAP/57DAP | 0.89854 | 0.466 |
68DAP/62DAP | 0.74037 | 0.082 |
68DAP/14DAP | 1.02617 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.69043 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.89347 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13181 | 1 |
1-1-2/M82 | 1.06272 | 1 |
12-2/M82 | 1.4953 | 0.61 |
12-4/M82 | 1.03363 | |
1-3/M82 | 0.91996 | 1 |
2-1-1/M82 | 0.62325 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96594 | 1 |
3-2/M82 | 0.871 | 1 |
4-1-1/M82 | 1.02925 | 1 |
4-1/M82 | 1.86955 | |
4-3-2/M82 | 0.82362 | |
4-3/M82 | 0.6703 | |
5-3/M82 | 0.93746 | 0.642 |
6-2/M82 | 0.54868 | |
6-3/M82 | 0.96897 | 1 |
7-1/M82 | 0.95659 | 1 |
7-2/M82 | 0.9393 | 1 |
9-3-2/M82 | 0.73634 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01887 | |
IL2-6/WTpooled | 0.7787 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99747 | 1 |
IL12-4/WTpooled | 1.03341 | 0.891 |
IL1-4/WTpooled | 1.10911 | 1 |
WT/WTpooled | 0.96208 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.11103 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02404 | 0.921 |
DC3000/delta hrp 6h | 1.97498 | |
DC3000/delta hrp 12h | 1.04117 | 1 |
DC3000/delta hrp 24h | 0.97938 | 0.91 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 7.71599 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23256 | 0.254 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.12424 | 1 |
Var 0h | 1.06799 | 1 |
Var 12h I row2-row1 | 1.10269 | 0.189 |
Var 12h NI row2-row1 | 0.86149 | 0.488 |
Var 36h I row2-row1 | 1.01421 | 1 |
Var 36h NI row2-row1 | 0.84491 | 0.45 |
Var 60h I row2-row1 | 1.50245 | 0.562 |
Var 60h NI row2-row1 | 0.92804 | 1 |
Time course 0hI-0hNI | 0.85295 | 0.516 |
Time course 12hI-12hNI | 1.31356 | 0.122 |
Time course 36hI-36hNI | 1.63706 | 0.011 |
Time course 60hI-60hNI | 5.95322 | 0.053 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.17351 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 4.22689 | 1 |
transgenic ySAMdc/azygous control (red) | 3.85021 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96726 | 0.097 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.5533 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.69735 | 0.187 |
|
|