Expression of 1-1-6.4.13.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.917870.61
27DAP/17DAP0.866450.749
39DAP/27DAP0.826930.507
41DAP/39DAP1.269910.468
42DAP/41DAP1.019581
43DAP/42DAP0.882130.827
47DAP/43DAP1.018021
52DAP/47DAP0.955640.865
57DAP/52DAP1.273630.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.195470.11
17DAP/reference1.108620.178
27DAP/reference1.010870.996
39DAP/reference1.081790.157
41DAP/reference1.123360.03
42DAP/reference0.96340.259
43DAP/reference1.007090.957
47DAP/reference0.917140.174
52DAP/reference0.844630.048
57DAP/reference0.879290.112

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.595220.055
27DAP/17DAP0.938040.821
39DAP/27DAP1.238250.383
41DAP/39DAP1.290980.59
42DAP/41DAP1.041211
43DAP/42DAP1.312490.034
47DAP/43DAP0.994720.977
52DAP/47DAP1.067070.756
57DAP/52DAP1.118410.533
57DAP/7DAP1.079371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.134490.257
17DAP/reference1.437440.006
27DAP/reference1.283510.011
39DAP/reference1.499940.009
41DAP/reference1.771730.011
42DAP/reference1.63290.009
43DAP/reference1.707670.007
47DAP/reference1.111780.604
52DAP/reference1.19980.098
57DAP/reference1.175610.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979420.72
17DAP/reference1.062860.658
27DAP/reference0.917840.257
39DAP/reference0.912790.243
41DAP/reference0.995090.615
42DAP/reference0.993460.655
43DAP/reference1.133490.526
47DAP/reference1.104580.124
52DAP/reference1.053750.882
57DAP/reference1.155980.252

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.189270.036
17DAP/reference1.131010.405
27DAP/reference1.460440.022
39DAP/reference1.339520.008
41DAP/reference1.359720.008
42DAP/reference1.3280.142
43DAP/reference1.163530.445
47DAP/reference1.005940.731
52DAP/reference1.314150.312
57DAP/reference0.882650.221

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.945961
26DAP/20DAP1.003261
34DAP/26DAP0.993320.988
51DAP/34DAP0.910770.532
52DAP/51DAP1.351160.616
53DAP/52DAP1.007961
55DAP/53DAP3.461190.589
57DAP/55DAP1.112620.779
62DAP/57DAP0.898540.466
68DAP/62DAP0.740370.082
68DAP/14DAP1.026171

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.690430.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.89347
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.131811
1-1-2/M821.062721
12-2/M821.49530.61
12-4/M821.03363
1-3/M820.919961
2-1-1/M820.62325
2-1/M82N/AN/A
2-6/M820.965941
3-2/M820.8711
4-1-1/M821.029251
4-1/M821.86955
4-3-2/M820.82362
4-3/M820.6703
5-3/M820.937460.642
6-2/M820.54868
6-3/M820.968971
7-1/M820.956591
7-2/M820.93931
9-3-2/M820.73634

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.01887
IL2-6/WTpooled0.77870.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.997471
IL12-4/WTpooled1.033410.891
IL1-4/WTpooled1.109111
WT/WTpooled0.962081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.111030.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.024040.921
DC3000/delta hrp 6h1.97498
DC3000/delta hrp 12h1.041171
DC3000/delta hrp 24h0.979380.91

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB7.71599
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.232560.254
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.124241
Var 0h1.067991
Var 12h I row2-row11.102690.189
Var 12h NI row2-row10.861490.488
Var 36h I row2-row11.014211
Var 36h NI row2-row10.844910.45
Var 60h I row2-row11.502450.562
Var 60h NI row2-row10.928041
Time course 0hI-0hNI0.852950.516
Time course 12hI-12hNI1.313560.122
Time course 36hI-36hNI1.637060.011
Time course 60hI-60hNI5.953220.053

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.173510.212
transgenic ySAMdc/azygous control (breaker)4.226891
transgenic ySAMdc/azygous control (red)3.850210.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.967260.097

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.55330.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.697350.187