Expression of 1-1-6.4.13.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.989170.839
27DAP/17DAP10.967
39DAP/27DAP0.838170.487
41DAP/39DAP1.672570.202
42DAP/41DAP0.951161
43DAP/42DAP0.957580.9
47DAP/43DAP0.939560.768
52DAP/47DAP1.402270.641
57DAP/52DAP1.01480.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.938430.269
17DAP/reference0.978890.474
27DAP/reference1.013010.759
39DAP/reference1.27680.504
41DAP/reference0.959860.434
42DAP/reference0.904920.004
43DAP/reference0.885910.259
47DAP/reference0.92580.032
52DAP/reference0.829140.033
57DAP/reference0.908150.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969030.644
27DAP/17DAP1.008260.973
39DAP/27DAP1.05710.558
41DAP/39DAP0.983231
42DAP/41DAP0.955280.568
43DAP/42DAP0.999791
47DAP/43DAP1.007210.956
52DAP/47DAP0.985670.913
57DAP/52DAP1.029880.851
57DAP/7DAP1.072981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.867290.078
17DAP/reference0.920780.044
27DAP/reference0.900140.011
39DAP/reference0.9170.014
41DAP/reference0.913040.044
42DAP/reference0.893210.015
43DAP/reference0.899290.019
47DAP/reference0.837470.05
52DAP/reference0.886530.057
57DAP/reference0.956670.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965230.503
17DAP/reference0.946130.26
27DAP/reference1.05110.917
39DAP/reference0.962340.33
41DAP/reference0.849030.038
42DAP/reference0.872550.039
43DAP/reference0.915980.17
47DAP/reference0.940570.253
52DAP/reference0.914830.04
57DAP/reference0.967390.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931360.047
17DAP/reference0.920560.239
27DAP/reference0.962660.195
39DAP/reference0.929440.054
41DAP/reference0.949670.371
42DAP/reference0.995350.816
43DAP/reference0.90280.088
47DAP/reference0.908840.132
52DAP/reference0.892980.368
57DAP/reference0.636790.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.019720.966
26DAP/20DAP0.984071
34DAP/26DAP1.141910.819
51DAP/34DAP1.015230.925
52DAP/51DAP1.017110.836
53DAP/52DAP1.048250.58
55DAP/53DAP0.955350.325
57DAP/55DAP1.014410.997
62DAP/57DAP1.01561
68DAP/62DAP1.074211
68DAP/14DAP0.716850.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.031630.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.825240.41
Mature Green Tomato/Ripe Tomato0.936750.522
Immature Eggplant/Mature Eggplant1.393310.05
Ripe Pepper/Ripe Tomato6.29599
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.95970.944
1-1-2/M820.990281
12-2/M820.98041
12-4/M820.982921
1-3/M820.956431
2-1-1/M821.084750.764
2-1/M821.155120.289
2-6/M820.974841
3-2/M820.989381
4-1-1/M821.013151
4-1/M820.94421
4-3-2/M821.012861
4-3/M821.004881
5-3/M820.952821
6-2/M821.000371
6-3/M821.012161
7-1/M821.029671
7-2/M821.01081
9-3-2/M820.832391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.162410.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.824430.418
IL12-4/WTpooled0.880320.484
IL1-4/WTpooled0.89869
WT/WTpooled1.138691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.19892

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.111280.656
DC3000/delta hrp 6h1.94871
DC3000/delta hrp 12h0.983311
DC3000/delta hrp 24h0.983640.957

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.111120.044
DC3000 delta B/DC3000 delta AB1.133340.292

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.652670.749
Exp 60h0.668070.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000561
Var 0h0.796851
Var 12h I row2-row11.124170.189
Var 12h NI row2-row10.943570.627
Var 36h I row2-row10.807870.805
Var 36h NI row2-row11.04361
Var 60h I row2-row11.177691
Var 60h NI row2-row11.287960.904
Time course 0hI-0hNI1.074080.833
Time course 12hI-12hNI1.013860.867
Time course 36hI-36hNI0.931140.202
Time course 60hI-60hNI1.175030.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.378140.455
transgenic ySAMdc/azygous control (breaker)1.185941
transgenic ySAMdc/azygous control (red)1.470830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.966830.112

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.065851

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.771861
Manapal/WT (break)0.845380.333
Manapal/WT (red)N/AN/A