Expression of 1-1-6.4.13.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98917 | 0.839 |
27DAP/17DAP | 1 | 0.967 |
39DAP/27DAP | 0.83817 | 0.487 |
41DAP/39DAP | 1.67257 | 0.202 |
42DAP/41DAP | 0.95116 | 1 |
43DAP/42DAP | 0.95758 | 0.9 |
47DAP/43DAP | 0.93956 | 0.768 |
52DAP/47DAP | 1.40227 | 0.641 |
57DAP/52DAP | 1.0148 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93843 | 0.269 |
17DAP/reference | 0.97889 | 0.474 |
27DAP/reference | 1.01301 | 0.759 |
39DAP/reference | 1.2768 | 0.504 |
41DAP/reference | 0.95986 | 0.434 |
42DAP/reference | 0.90492 | 0.004 |
43DAP/reference | 0.88591 | 0.259 |
47DAP/reference | 0.9258 | 0.032 |
52DAP/reference | 0.82914 | 0.033 |
57DAP/reference | 0.90815 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96903 | 0.644 |
27DAP/17DAP | 1.00826 | 0.973 |
39DAP/27DAP | 1.0571 | 0.558 |
41DAP/39DAP | 0.98323 | 1 |
42DAP/41DAP | 0.95528 | 0.568 |
43DAP/42DAP | 0.99979 | 1 |
47DAP/43DAP | 1.00721 | 0.956 |
52DAP/47DAP | 0.98567 | 0.913 |
57DAP/52DAP | 1.02988 | 0.851 |
57DAP/7DAP | 1.07298 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86729 | 0.078 |
17DAP/reference | 0.92078 | 0.044 |
27DAP/reference | 0.90014 | 0.011 |
39DAP/reference | 0.917 | 0.014 |
41DAP/reference | 0.91304 | 0.044 |
42DAP/reference | 0.89321 | 0.015 |
43DAP/reference | 0.89929 | 0.019 |
47DAP/reference | 0.83747 | 0.05 |
52DAP/reference | 0.88653 | 0.057 |
57DAP/reference | 0.95667 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96523 | 0.503 |
17DAP/reference | 0.94613 | 0.26 |
27DAP/reference | 1.0511 | 0.917 |
39DAP/reference | 0.96234 | 0.33 |
41DAP/reference | 0.84903 | 0.038 |
42DAP/reference | 0.87255 | 0.039 |
43DAP/reference | 0.91598 | 0.17 |
47DAP/reference | 0.94057 | 0.253 |
52DAP/reference | 0.91483 | 0.04 |
57DAP/reference | 0.96739 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93136 | 0.047 |
17DAP/reference | 0.92056 | 0.239 |
27DAP/reference | 0.96266 | 0.195 |
39DAP/reference | 0.92944 | 0.054 |
41DAP/reference | 0.94967 | 0.371 |
42DAP/reference | 0.99535 | 0.816 |
43DAP/reference | 0.9028 | 0.088 |
47DAP/reference | 0.90884 | 0.132 |
52DAP/reference | 0.89298 | 0.368 |
57DAP/reference | 0.63679 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01972 | 0.966 |
26DAP/20DAP | 0.98407 | 1 |
34DAP/26DAP | 1.14191 | 0.819 |
51DAP/34DAP | 1.01523 | 0.925 |
52DAP/51DAP | 1.01711 | 0.836 |
53DAP/52DAP | 1.04825 | 0.58 |
55DAP/53DAP | 0.95535 | 0.325 |
57DAP/55DAP | 1.01441 | 0.997 |
62DAP/57DAP | 1.0156 | 1 |
68DAP/62DAP | 1.07421 | 1 |
68DAP/14DAP | 0.71685 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03163 | 0.369 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82524 | 0.41 |
Mature Green Tomato/Ripe Tomato | 0.93675 | 0.522 |
Immature Eggplant/Mature Eggplant | 1.39331 | 0.05 |
Ripe Pepper/Ripe Tomato | 6.29599 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9597 | 0.944 |
1-1-2/M82 | 0.99028 | 1 |
12-2/M82 | 0.9804 | 1 |
12-4/M82 | 0.98292 | 1 |
1-3/M82 | 0.95643 | 1 |
2-1-1/M82 | 1.08475 | 0.764 |
2-1/M82 | 1.15512 | 0.289 |
2-6/M82 | 0.97484 | 1 |
3-2/M82 | 0.98938 | 1 |
4-1-1/M82 | 1.01315 | 1 |
4-1/M82 | 0.9442 | 1 |
4-3-2/M82 | 1.01286 | 1 |
4-3/M82 | 1.00488 | 1 |
5-3/M82 | 0.95282 | 1 |
6-2/M82 | 1.00037 | 1 |
6-3/M82 | 1.01216 | 1 |
7-1/M82 | 1.02967 | 1 |
7-2/M82 | 1.0108 | 1 |
9-3-2/M82 | 0.83239 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.16241 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.82443 | 0.418 |
IL12-4/WTpooled | 0.88032 | 0.484 |
IL1-4/WTpooled | 0.89869 | |
WT/WTpooled | 1.13869 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19892 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11128 | 0.656 |
DC3000/delta hrp 6h | 1.9487 | 1 |
DC3000/delta hrp 12h | 0.98331 | 1 |
DC3000/delta hrp 24h | 0.98364 | 0.957 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11112 | 0.044 |
DC3000 delta B/DC3000 delta AB | 1.13334 | 0.292 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.65267 | 0.749 |
Exp 60h | 0.66807 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00056 | 1 |
Var 0h | 0.79685 | 1 |
Var 12h I row2-row1 | 1.12417 | 0.189 |
Var 12h NI row2-row1 | 0.94357 | 0.627 |
Var 36h I row2-row1 | 0.80787 | 0.805 |
Var 36h NI row2-row1 | 1.0436 | 1 |
Var 60h I row2-row1 | 1.17769 | 1 |
Var 60h NI row2-row1 | 1.28796 | 0.904 |
Time course 0hI-0hNI | 1.07408 | 0.833 |
Time course 12hI-12hNI | 1.01386 | 0.867 |
Time course 36hI-36hNI | 0.93114 | 0.202 |
Time course 60hI-60hNI | 1.17503 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.37814 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 1.18594 | 1 |
transgenic ySAMdc/azygous control (red) | 1.47083 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96683 | 0.112 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06585 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77186 | 1 |
Manapal/WT (break) | 0.84538 | 0.333 |
Manapal/WT (red) | N/A | N/A |
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