Expression of 1-1-6.4.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.165070.656
27DAP/17DAP1.13930.88
39DAP/27DAP0.972120.682
41DAP/39DAP0.841790.401
42DAP/41DAP1.205060.868
43DAP/42DAP1.182240.867
47DAP/43DAP2.061510.293
52DAP/47DAP1.172190.886
57DAP/52DAP1.234750.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.975860.55
17DAP/reference1.026830.764
27DAP/reference1.088350.239
39DAP/reference1.18950.218
41DAP/reference1.288320.085
42DAP/reference1.025490.68
43DAP/reference1.432610.009
47DAP/reference1.755740.001
52DAP/reference1.301330.023
57DAP/reference1.185010.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.154920.144
27DAP/17DAP0.840270.279
39DAP/27DAP1.191810.373
41DAP/39DAP0.99620.98
42DAP/41DAP1.256540.46
43DAP/42DAP1.09110.446
47DAP/43DAP0.954060.833
52DAP/47DAP1.027250.933
57DAP/52DAP1.018880.869
57DAP/7DAP1.259820.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965630.445
17DAP/reference1.136190.147
27DAP/reference0.76660.018
39DAP/reference1.098510.371
41DAP/reference0.885430.133
42DAP/reference0.850790.151
43DAP/reference0.982030.502
47DAP/reference0.978960.671
52DAP/reference0.929780.332
57DAP/reference1.078280.746

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048590.741
17DAP/reference1.274580.07
27DAP/reference1.095450.961
39DAP/reference1.046851
41DAP/reference1.003410.683
42DAP/reference0.900440.189
43DAP/reference1.053660.939
47DAP/reference1.017761
52DAP/reference0.838230.021
57DAP/reference1.075140.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.078110.691
17DAP/reference0.87590.136
27DAP/reference0.695940.027
39DAP/reference0.960940.464
41DAP/reference0.770920.043
42DAP/reference0.878660.025
43DAP/reference1.077490.555
47DAP/reference1.809320.013
52DAP/reference1.411070.079
57DAP/reference2.844010.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.251640.966
26DAP/20DAP1.372230.165
34DAP/26DAP1.104471
51DAP/34DAP1.680040.043
52DAP/51DAP0.76011
53DAP/52DAP1.989890.028
55DAP/53DAP0.868920.154
57DAP/55DAP0.750360.09
62DAP/57DAP0.706270.004
68DAP/62DAP0.968240.81
68DAP/14DAP1.137960.091

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.96790.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.729790.203
Mature Green Tomato/Ripe Tomato0.788920.317
Immature Eggplant/Mature Eggplant2.436830.05
Ripe Pepper/Ripe Tomato0.631970.224
Mature Eggplant/Ripe Tomato0.978681

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.075870.742
1-1-2/M821.169441
12-2/M821.042851
12-4/M821.057131
1-3/M821.622490.479
2-1-1/M821.08430.764
2-1/M820.755150.345
2-6/M821.117080.395
3-2/M821.16190.717
4-1-1/M821.16381
4-1/M820.638750.525
4-3-2/M821.018271
4-3/M821.439950.268
5-3/M820.945481
6-2/M821.337691
6-3/M820.881231
7-1/M820.91910.476
7-2/M821.049981
9-3-2/M821.558181

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.86833
IL2-6/WTpooled1.119720.788
IL7-5/WTpooled1.79090.792
IL7-3/WTpooled0.966391
IL12-4/WTpooled1.285310.523
IL1-4/WTpooled1.379311
WT/WTpooled1.04421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.041391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.130780.774
DC3000/delta hrp 6h1.038061
DC3000/delta hrp 12h1.210731
DC3000/delta hrp 24h1.046660.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.720150.03
DC3000 delta B/DC3000 delta AB1.028330.714

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.220090.254
Exp 36h1.057871
Exp 60h1.490790.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.031491
Var 0h1.024890.936
Var 12h I row2-row10.979480.948
Var 12h NI row2-row11.053821
Var 36h I row2-row11.315140.742
Var 36h NI row2-row11.264971
Var 60h I row2-row10.816430.287
Var 60h NI row2-row11.016571
Time course 0hI-0hNI1.07340.764
Time course 12hI-12hNI0.884240.171
Time course 36hI-36hNI0.911730.091
Time course 60hI-60hNI1.067460.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.963660.297
transgenic ySAMdc/azygous control (breaker)0.881580.49
transgenic ySAMdc/azygous control (red)0.883781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.19770.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.967560.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.769251
Manapal/WT (break)0.794651
Manapal/WT (red)0.795960.274