Expression of 1-1-6.4.14.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16507 | 0.656 |
27DAP/17DAP | 1.1393 | 0.88 |
39DAP/27DAP | 0.97212 | 0.682 |
41DAP/39DAP | 0.84179 | 0.401 |
42DAP/41DAP | 1.20506 | 0.868 |
43DAP/42DAP | 1.18224 | 0.867 |
47DAP/43DAP | 2.06151 | 0.293 |
52DAP/47DAP | 1.17219 | 0.886 |
57DAP/52DAP | 1.23475 | 0.964 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97586 | 0.55 |
17DAP/reference | 1.02683 | 0.764 |
27DAP/reference | 1.08835 | 0.239 |
39DAP/reference | 1.1895 | 0.218 |
41DAP/reference | 1.28832 | 0.085 |
42DAP/reference | 1.02549 | 0.68 |
43DAP/reference | 1.43261 | 0.009 |
47DAP/reference | 1.75574 | 0.001 |
52DAP/reference | 1.30133 | 0.023 |
57DAP/reference | 1.18501 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15492 | 0.144 |
27DAP/17DAP | 0.84027 | 0.279 |
39DAP/27DAP | 1.19181 | 0.373 |
41DAP/39DAP | 0.9962 | 0.98 |
42DAP/41DAP | 1.25654 | 0.46 |
43DAP/42DAP | 1.0911 | 0.446 |
47DAP/43DAP | 0.95406 | 0.833 |
52DAP/47DAP | 1.02725 | 0.933 |
57DAP/52DAP | 1.01888 | 0.869 |
57DAP/7DAP | 1.25982 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96563 | 0.445 |
17DAP/reference | 1.13619 | 0.147 |
27DAP/reference | 0.7666 | 0.018 |
39DAP/reference | 1.09851 | 0.371 |
41DAP/reference | 0.88543 | 0.133 |
42DAP/reference | 0.85079 | 0.151 |
43DAP/reference | 0.98203 | 0.502 |
47DAP/reference | 0.97896 | 0.671 |
52DAP/reference | 0.92978 | 0.332 |
57DAP/reference | 1.07828 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04859 | 0.741 |
17DAP/reference | 1.27458 | 0.07 |
27DAP/reference | 1.09545 | 0.961 |
39DAP/reference | 1.04685 | 1 |
41DAP/reference | 1.00341 | 0.683 |
42DAP/reference | 0.90044 | 0.189 |
43DAP/reference | 1.05366 | 0.939 |
47DAP/reference | 1.01776 | 1 |
52DAP/reference | 0.83823 | 0.021 |
57DAP/reference | 1.07514 | 0.688 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07811 | 0.691 |
17DAP/reference | 0.8759 | 0.136 |
27DAP/reference | 0.69594 | 0.027 |
39DAP/reference | 0.96094 | 0.464 |
41DAP/reference | 0.77092 | 0.043 |
42DAP/reference | 0.87866 | 0.025 |
43DAP/reference | 1.07749 | 0.555 |
47DAP/reference | 1.80932 | 0.013 |
52DAP/reference | 1.41107 | 0.079 |
57DAP/reference | 2.84401 | 0.014 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25164 | 0.966 |
26DAP/20DAP | 1.37223 | 0.165 |
34DAP/26DAP | 1.10447 | 1 |
51DAP/34DAP | 1.68004 | 0.043 |
52DAP/51DAP | 0.7601 | 1 |
53DAP/52DAP | 1.98989 | 0.028 |
55DAP/53DAP | 0.86892 | 0.154 |
57DAP/55DAP | 0.75036 | 0.09 |
62DAP/57DAP | 0.70627 | 0.004 |
68DAP/62DAP | 0.96824 | 0.81 |
68DAP/14DAP | 1.13796 | 0.091 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9679 | 0.547 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72979 | 0.203 |
Mature Green Tomato/Ripe Tomato | 0.78892 | 0.317 |
Immature Eggplant/Mature Eggplant | 2.43683 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.63197 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.97868 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07587 | 0.742 |
1-1-2/M82 | 1.16944 | 1 |
12-2/M82 | 1.04285 | 1 |
12-4/M82 | 1.05713 | 1 |
1-3/M82 | 1.62249 | 0.479 |
2-1-1/M82 | 1.0843 | 0.764 |
2-1/M82 | 0.75515 | 0.345 |
2-6/M82 | 1.11708 | 0.395 |
3-2/M82 | 1.1619 | 0.717 |
4-1-1/M82 | 1.1638 | 1 |
4-1/M82 | 0.63875 | 0.525 |
4-3-2/M82 | 1.01827 | 1 |
4-3/M82 | 1.43995 | 0.268 |
5-3/M82 | 0.94548 | 1 |
6-2/M82 | 1.33769 | 1 |
6-3/M82 | 0.88123 | 1 |
7-1/M82 | 0.9191 | 0.476 |
7-2/M82 | 1.04998 | 1 |
9-3-2/M82 | 1.55818 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86833 | |
IL2-6/WTpooled | 1.11972 | 0.788 |
IL7-5/WTpooled | 1.7909 | 0.792 |
IL7-3/WTpooled | 0.96639 | 1 |
IL12-4/WTpooled | 1.28531 | 0.523 |
IL1-4/WTpooled | 1.37931 | 1 |
WT/WTpooled | 1.0442 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04139 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13078 | 0.774 |
DC3000/delta hrp 6h | 1.03806 | 1 |
DC3000/delta hrp 12h | 1.21073 | 1 |
DC3000/delta hrp 24h | 1.04666 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.72015 | 0.03 |
DC3000 delta B/DC3000 delta AB | 1.02833 | 0.714 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.22009 | 0.254 |
Exp 36h | 1.05787 | 1 |
Exp 60h | 1.49079 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03149 | 1 |
Var 0h | 1.02489 | 0.936 |
Var 12h I row2-row1 | 0.97948 | 0.948 |
Var 12h NI row2-row1 | 1.05382 | 1 |
Var 36h I row2-row1 | 1.31514 | 0.742 |
Var 36h NI row2-row1 | 1.26497 | 1 |
Var 60h I row2-row1 | 0.81643 | 0.287 |
Var 60h NI row2-row1 | 1.01657 | 1 |
Time course 0hI-0hNI | 1.0734 | 0.764 |
Time course 12hI-12hNI | 0.88424 | 0.171 |
Time course 36hI-36hNI | 0.91173 | 0.091 |
Time course 60hI-60hNI | 1.06746 | 0.302 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96366 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.88158 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.88378 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.1977 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96756 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76925 | 1 |
Manapal/WT (break) | 0.79465 | 1 |
Manapal/WT (red) | 0.79596 | 0.274 |
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