Expression of 1-1-6.4.14.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.504570.336
27DAP/17DAP1.174120.841
39DAP/27DAP1.045080.84
41DAP/39DAP0.880050.52
42DAP/41DAP1.137070.843
43DAP/42DAP0.914150.7
47DAP/43DAP0.948720.779
52DAP/47DAP0.903360.698
57DAP/52DAP1.231660.886

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.787180.073
17DAP/reference0.718640.009
27DAP/reference0.884060.201
39DAP/reference0.799410.027
41DAP/reference0.599120.008
42DAP/reference0.790610.007
43DAP/reference0.875580.029
47DAP/reference0.888090.148
52DAP/reference1.346290.076
57DAP/reference1.425210.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.427120.121
27DAP/17DAP1.113590.65
39DAP/27DAP0.999970.984
41DAP/39DAP1.116980.801
42DAP/41DAP1.228280.593
43DAP/42DAP1.139890.83
47DAP/43DAP1.177580.529
52DAP/47DAP1.03740.883
57DAP/52DAP0.831560.342
57DAP/7DAP1.503241

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.238820.1
17DAP/reference1.513120.02
27DAP/reference1.434260.012
39DAP/reference1.27010.053
41DAP/reference1.227010.086
42DAP/reference1.310610.046
43DAP/reference1.460680.008
47DAP/reference1.037331
52DAP/reference1.387430.028
57DAP/reference1.317260.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.623230.008
17DAP/reference0.58010.003
27DAP/reference0.836880.044
39DAP/reference0.799910.076
41DAP/reference0.941920.231
42DAP/reference0.829510.012
43DAP/reference0.717870.033
47DAP/reference0.730880.011
52DAP/reference0.837570.012
57DAP/reference0.6030.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.168650.158
17DAP/reference1.019130.825
27DAP/reference1.414470.039
39DAP/reference1.488190.014
41DAP/reference1.233840.086
42DAP/reference1.190490.347
43DAP/reference1.362490.051
47DAP/reference0.963240.421
52DAP/reference1.684710.165
57DAP/reference1.707820.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.207140.966
26DAP/20DAP1.025091
34DAP/26DAP1.173720.819
51DAP/34DAP1.737420.402
52DAP/51DAP0.931171
53DAP/52DAP1.05840.961
55DAP/53DAP1.074040.722
57DAP/55DAP0.76450.309
62DAP/57DAP0.915670.681
68DAP/62DAP2.074980.013
68DAP/14DAP2.519360.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.567460.077

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.426940.399
Immature Eggplant/Mature Eggplant0.99247
Ripe Pepper/Ripe Tomato1.120531
Mature Eggplant/Ripe Tomato0.48145

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.8110.605
1-1-2/M820.919771
12-2/M820.872380.955
12-4/M820.819230.282
1-3/M821.172011
2-1-1/M820.954180.92
2-1/M821.239710.345
2-6/M820.889640.501
3-2/M820.946720.752
4-1-1/M821.057591
4-1/M821.13776
4-3-2/M821.05955
4-3/M820.873370.72
5-3/M821.211860.378
6-2/M820.83614
6-3/M821.151291
7-1/M821.28638
7-2/M820.999951
9-3-2/M821.027391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.123
IL2-6/WTpooled2.43968
IL7-5/WTpooled1.285581
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.962411
WT/WTpooled0.864910.425

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.77680.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041170.921
DC3000/delta hrp 6h1.215341
DC3000/delta hrp 12h0.85611
DC3000/delta hrp 24h1.169230.103

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.289730.254
Exp 36hN/AN/A
Exp 60h1.306170.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.051141
Var 0h1.166550.98
Var 12h I row2-row10.99381
Var 12h NI row2-row12.589141
Var 36h I row2-row10.880141
Var 36h NI row2-row11.054970.253
Var 60h I row2-row11.04620.562
Var 60h NI row2-row10.848220.292
Time course 0hI-0hNI1.03040.852
Time course 12hI-12hNI0.940060.519
Time course 36hI-36hNI1.088440.147
Time course 60hI-60hNI1.834850.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.870740.314
transgenic ySAMdc/azygous control (breaker)0.798730.251
transgenic ySAMdc/azygous control (red)0.850121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016850.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.208440.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.424990.172
Manapal/WT (break)0.583110.299
Manapal/WT (red)0.337360.181