Expression of 1-1-6.4.14.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.50457 | 0.336 |
27DAP/17DAP | 1.17412 | 0.841 |
39DAP/27DAP | 1.04508 | 0.84 |
41DAP/39DAP | 0.88005 | 0.52 |
42DAP/41DAP | 1.13707 | 0.843 |
43DAP/42DAP | 0.91415 | 0.7 |
47DAP/43DAP | 0.94872 | 0.779 |
52DAP/47DAP | 0.90336 | 0.698 |
57DAP/52DAP | 1.23166 | 0.886 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78718 | 0.073 |
17DAP/reference | 0.71864 | 0.009 |
27DAP/reference | 0.88406 | 0.201 |
39DAP/reference | 0.79941 | 0.027 |
41DAP/reference | 0.59912 | 0.008 |
42DAP/reference | 0.79061 | 0.007 |
43DAP/reference | 0.87558 | 0.029 |
47DAP/reference | 0.88809 | 0.148 |
52DAP/reference | 1.34629 | 0.076 |
57DAP/reference | 1.42521 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42712 | 0.121 |
27DAP/17DAP | 1.11359 | 0.65 |
39DAP/27DAP | 0.99997 | 0.984 |
41DAP/39DAP | 1.11698 | 0.801 |
42DAP/41DAP | 1.22828 | 0.593 |
43DAP/42DAP | 1.13989 | 0.83 |
47DAP/43DAP | 1.17758 | 0.529 |
52DAP/47DAP | 1.0374 | 0.883 |
57DAP/52DAP | 0.83156 | 0.342 |
57DAP/7DAP | 1.50324 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23882 | 0.1 |
17DAP/reference | 1.51312 | 0.02 |
27DAP/reference | 1.43426 | 0.012 |
39DAP/reference | 1.2701 | 0.053 |
41DAP/reference | 1.22701 | 0.086 |
42DAP/reference | 1.31061 | 0.046 |
43DAP/reference | 1.46068 | 0.008 |
47DAP/reference | 1.03733 | 1 |
52DAP/reference | 1.38743 | 0.028 |
57DAP/reference | 1.31726 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.62323 | 0.008 |
17DAP/reference | 0.5801 | 0.003 |
27DAP/reference | 0.83688 | 0.044 |
39DAP/reference | 0.79991 | 0.076 |
41DAP/reference | 0.94192 | 0.231 |
42DAP/reference | 0.82951 | 0.012 |
43DAP/reference | 0.71787 | 0.033 |
47DAP/reference | 0.73088 | 0.011 |
52DAP/reference | 0.83757 | 0.012 |
57DAP/reference | 0.603 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16865 | 0.158 |
17DAP/reference | 1.01913 | 0.825 |
27DAP/reference | 1.41447 | 0.039 |
39DAP/reference | 1.48819 | 0.014 |
41DAP/reference | 1.23384 | 0.086 |
42DAP/reference | 1.19049 | 0.347 |
43DAP/reference | 1.36249 | 0.051 |
47DAP/reference | 0.96324 | 0.421 |
52DAP/reference | 1.68471 | 0.165 |
57DAP/reference | 1.70782 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.20714 | 0.966 |
26DAP/20DAP | 1.02509 | 1 |
34DAP/26DAP | 1.17372 | 0.819 |
51DAP/34DAP | 1.73742 | 0.402 |
52DAP/51DAP | 0.93117 | 1 |
53DAP/52DAP | 1.0584 | 0.961 |
55DAP/53DAP | 1.07404 | 0.722 |
57DAP/55DAP | 0.7645 | 0.309 |
62DAP/57DAP | 0.91567 | 0.681 |
68DAP/62DAP | 2.07498 | 0.013 |
68DAP/14DAP | 2.51936 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.56746 | 0.077 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.42694 | 0.399 |
Immature Eggplant/Mature Eggplant | 0.99247 | |
Ripe Pepper/Ripe Tomato | 1.12053 | 1 |
Mature Eggplant/Ripe Tomato | 0.48145 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.811 | 0.605 |
1-1-2/M82 | 0.91977 | 1 |
12-2/M82 | 0.87238 | 0.955 |
12-4/M82 | 0.81923 | 0.282 |
1-3/M82 | 1.17201 | 1 |
2-1-1/M82 | 0.95418 | 0.92 |
2-1/M82 | 1.23971 | 0.345 |
2-6/M82 | 0.88964 | 0.501 |
3-2/M82 | 0.94672 | 0.752 |
4-1-1/M82 | 1.05759 | 1 |
4-1/M82 | 1.13776 | |
4-3-2/M82 | 1.05955 | |
4-3/M82 | 0.87337 | 0.72 |
5-3/M82 | 1.21186 | 0.378 |
6-2/M82 | 0.83614 | |
6-3/M82 | 1.15129 | 1 |
7-1/M82 | 1.28638 | |
7-2/M82 | 0.99995 | 1 |
9-3-2/M82 | 1.02739 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.123 | |
IL2-6/WTpooled | 2.43968 | |
IL7-5/WTpooled | 1.28558 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.96241 | 1 |
WT/WTpooled | 0.86491 | 0.425 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.7768 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04117 | 0.921 |
DC3000/delta hrp 6h | 1.21534 | 1 |
DC3000/delta hrp 12h | 0.8561 | 1 |
DC3000/delta hrp 24h | 1.16923 | 0.103 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.28973 | 0.254 |
Exp 36h | N/A | N/A |
Exp 60h | 1.30617 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05114 | 1 |
Var 0h | 1.16655 | 0.98 |
Var 12h I row2-row1 | 0.9938 | 1 |
Var 12h NI row2-row1 | 2.58914 | 1 |
Var 36h I row2-row1 | 0.88014 | 1 |
Var 36h NI row2-row1 | 1.05497 | 0.253 |
Var 60h I row2-row1 | 1.0462 | 0.562 |
Var 60h NI row2-row1 | 0.84822 | 0.292 |
Time course 0hI-0hNI | 1.0304 | 0.852 |
Time course 12hI-12hNI | 0.94006 | 0.519 |
Time course 36hI-36hNI | 1.08844 | 0.147 |
Time course 60hI-60hNI | 1.83485 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87074 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.79873 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.85012 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01685 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.20844 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.42499 | 0.172 |
Manapal/WT (break) | 0.58311 | 0.299 |
Manapal/WT (red) | 0.33736 | 0.181 |
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