Expression of 1-1-6.4.14.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.277820.463
27DAP/17DAP1.031861
39DAP/27DAP0.848520.392
41DAP/39DAP0.891780.593
42DAP/41DAP1.465380.458
43DAP/42DAP1.365020.309
47DAP/43DAP1.183850.463
52DAP/47DAP0.601190.175
57DAP/52DAP0.887060.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.053080.662
17DAP/reference1.078890.508
27DAP/reference1.236870.194
39DAP/reference1.485290.058
41DAP/reference1.246460.038
42DAP/reference1.032760.782
43DAP/reference1.065610.617
47DAP/reference1.287340.007
52DAP/reference0.999240.749
57DAP/reference1.124450.463

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.059960.881
27DAP/17DAP0.947360.684
39DAP/27DAP0.94950.616
41DAP/39DAP0.863260.321
42DAP/41DAP1.156610.514
43DAP/42DAP0.998751
47DAP/43DAP0.830550.069
52DAP/47DAP1.140070.519
57DAP/52DAP0.943340.612
57DAP/7DAP0.868321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.783540.115
17DAP/reference0.917650.192
27DAP/reference1.191930.301
39DAP/reference0.981890.64
41DAP/reference0.783740.044
42DAP/reference0.930950.151
43DAP/reference1.124970.457
47DAP/reference0.938110.383
52DAP/reference1.018271
57DAP/reference0.987040.569

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066910.36
17DAP/reference1.1830.143
27DAP/reference1.314320.1
39DAP/reference1.101090.725
41DAP/reference1.144060.416
42DAP/reference1.578620.011
43DAP/reference1.476730.012
47DAP/reference1.473590.009
52DAP/reference1.194150.168
57DAP/reference1.067130.672

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.79110.071
17DAP/reference1.168170.321
27DAP/reference1.026920.934
39DAP/reference1.004280.889
41DAP/reference1.188740.521
42DAP/reference1.028750.789
43DAP/reference0.992980.66
47DAP/reference0.993420.646
52DAP/reference1.019370.704
57DAP/reference1.308390.098

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.753240.966
26DAP/20DAP0.664890.317
34DAP/26DAP1.365621
51DAP/34DAP1.00470.911
52DAP/51DAP0.858081
53DAP/52DAP1.2450.171
55DAP/53DAP0.846560.233
57DAP/55DAP1.103440.71
62DAP/57DAP0.65970.002
68DAP/62DAP0.943120.722
68DAP/14DAP0.801080.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.90640.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.610280.175
Mature Green Tomato/Ripe Tomato2.088240.015
Immature Eggplant/Mature Eggplant0.67870.1
Ripe Pepper/Ripe Tomato1.617521
Mature Eggplant/Ripe Tomato1.681480.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.031290.742
1-1-2/M821.282630.977
12-2/M820.944080.955
12-4/M820.938461
1-3/M820.885150.501
2-1-1/M821.229960.354
2-1/M821.056741
2-6/M821.344430.425
3-2/M820.914150.752
4-1-1/M821.160031
4-1/M821.28120.853
4-3-2/M821.193840.284
4-3/M821.217731
5-3/M821.053751
6-2/M820.819731
6-3/M821.008011
7-1/M821.10820.598
7-2/M820.705480.796
9-3-2/M821.267031

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.97769
IL2-6/WTpooled0.680970.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.969791
IL12-4/WTpooled1.040491
IL1-4/WTpooled1.114851
WT/WTpooled1.005781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.98971

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.923740.868
DC3000/delta hrp 6h1.137741
DC3000/delta hrp 12h1.067141
DC3000/delta hrp 24h0.652610.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.795550.117
DC3000 delta B/DC3000 delta AB0.812950.071

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.11871
Exp 36h0.574750.419
Exp 60h0.745540.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023311
Var 0h0.975091
Var 12h I row2-row10.766430.353
Var 12h NI row2-row10.953460.494
Var 36h I row2-row10.849751
Var 36h NI row2-row11.400470.276
Var 60h I row2-row10.859340.582
Var 60h NI row2-row10.956661
Time course 0hI-0hNI1.060910.719
Time course 12hI-12hNI0.927020.316
Time course 36hI-36hNI0.869270.136
Time course 60hI-60hNI0.218460.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.993340.862
transgenic ySAMdc/azygous control (breaker)1.159531
transgenic ySAMdc/azygous control (red)1.175650.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.964260.168

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.864520.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.135770.09
Manapal/WT (break)1.750610.13
Manapal/WT (red)1.840210.142