Expression of 1-1-6.4.14.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27782 | 0.463 |
27DAP/17DAP | 1.03186 | 1 |
39DAP/27DAP | 0.84852 | 0.392 |
41DAP/39DAP | 0.89178 | 0.593 |
42DAP/41DAP | 1.46538 | 0.458 |
43DAP/42DAP | 1.36502 | 0.309 |
47DAP/43DAP | 1.18385 | 0.463 |
52DAP/47DAP | 0.60119 | 0.175 |
57DAP/52DAP | 0.88706 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05308 | 0.662 |
17DAP/reference | 1.07889 | 0.508 |
27DAP/reference | 1.23687 | 0.194 |
39DAP/reference | 1.48529 | 0.058 |
41DAP/reference | 1.24646 | 0.038 |
42DAP/reference | 1.03276 | 0.782 |
43DAP/reference | 1.06561 | 0.617 |
47DAP/reference | 1.28734 | 0.007 |
52DAP/reference | 0.99924 | 0.749 |
57DAP/reference | 1.12445 | 0.463 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05996 | 0.881 |
27DAP/17DAP | 0.94736 | 0.684 |
39DAP/27DAP | 0.9495 | 0.616 |
41DAP/39DAP | 0.86326 | 0.321 |
42DAP/41DAP | 1.15661 | 0.514 |
43DAP/42DAP | 0.99875 | 1 |
47DAP/43DAP | 0.83055 | 0.069 |
52DAP/47DAP | 1.14007 | 0.519 |
57DAP/52DAP | 0.94334 | 0.612 |
57DAP/7DAP | 0.86832 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78354 | 0.115 |
17DAP/reference | 0.91765 | 0.192 |
27DAP/reference | 1.19193 | 0.301 |
39DAP/reference | 0.98189 | 0.64 |
41DAP/reference | 0.78374 | 0.044 |
42DAP/reference | 0.93095 | 0.151 |
43DAP/reference | 1.12497 | 0.457 |
47DAP/reference | 0.93811 | 0.383 |
52DAP/reference | 1.01827 | 1 |
57DAP/reference | 0.98704 | 0.569 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06691 | 0.36 |
17DAP/reference | 1.183 | 0.143 |
27DAP/reference | 1.31432 | 0.1 |
39DAP/reference | 1.10109 | 0.725 |
41DAP/reference | 1.14406 | 0.416 |
42DAP/reference | 1.57862 | 0.011 |
43DAP/reference | 1.47673 | 0.012 |
47DAP/reference | 1.47359 | 0.009 |
52DAP/reference | 1.19415 | 0.168 |
57DAP/reference | 1.06713 | 0.672 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7911 | 0.071 |
17DAP/reference | 1.16817 | 0.321 |
27DAP/reference | 1.02692 | 0.934 |
39DAP/reference | 1.00428 | 0.889 |
41DAP/reference | 1.18874 | 0.521 |
42DAP/reference | 1.02875 | 0.789 |
43DAP/reference | 0.99298 | 0.66 |
47DAP/reference | 0.99342 | 0.646 |
52DAP/reference | 1.01937 | 0.704 |
57DAP/reference | 1.30839 | 0.098 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.75324 | 0.966 |
26DAP/20DAP | 0.66489 | 0.317 |
34DAP/26DAP | 1.36562 | 1 |
51DAP/34DAP | 1.0047 | 0.911 |
52DAP/51DAP | 0.85808 | 1 |
53DAP/52DAP | 1.245 | 0.171 |
55DAP/53DAP | 0.84656 | 0.233 |
57DAP/55DAP | 1.10344 | 0.71 |
62DAP/57DAP | 0.6597 | 0.002 |
68DAP/62DAP | 0.94312 | 0.722 |
68DAP/14DAP | 0.80108 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9064 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.61028 | 0.175 |
Mature Green Tomato/Ripe Tomato | 2.08824 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.6787 | 0.1 |
Ripe Pepper/Ripe Tomato | 1.61752 | 1 |
Mature Eggplant/Ripe Tomato | 1.68148 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03129 | 0.742 |
1-1-2/M82 | 1.28263 | 0.977 |
12-2/M82 | 0.94408 | 0.955 |
12-4/M82 | 0.93846 | 1 |
1-3/M82 | 0.88515 | 0.501 |
2-1-1/M82 | 1.22996 | 0.354 |
2-1/M82 | 1.05674 | 1 |
2-6/M82 | 1.34443 | 0.425 |
3-2/M82 | 0.91415 | 0.752 |
4-1-1/M82 | 1.16003 | 1 |
4-1/M82 | 1.2812 | 0.853 |
4-3-2/M82 | 1.19384 | 0.284 |
4-3/M82 | 1.21773 | 1 |
5-3/M82 | 1.05375 | 1 |
6-2/M82 | 0.81973 | 1 |
6-3/M82 | 1.00801 | 1 |
7-1/M82 | 1.1082 | 0.598 |
7-2/M82 | 0.70548 | 0.796 |
9-3-2/M82 | 1.26703 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.97769 | |
IL2-6/WTpooled | 0.68097 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.96979 | 1 |
IL12-4/WTpooled | 1.04049 | 1 |
IL1-4/WTpooled | 1.11485 | 1 |
WT/WTpooled | 1.00578 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9897 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92374 | 0.868 |
DC3000/delta hrp 6h | 1.13774 | 1 |
DC3000/delta hrp 12h | 1.06714 | 1 |
DC3000/delta hrp 24h | 0.65261 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.79555 | 0.117 |
DC3000 delta B/DC3000 delta AB | 0.81295 | 0.071 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1187 | 1 |
Exp 36h | 0.57475 | 0.419 |
Exp 60h | 0.74554 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02331 | 1 |
Var 0h | 0.97509 | 1 |
Var 12h I row2-row1 | 0.76643 | 0.353 |
Var 12h NI row2-row1 | 0.95346 | 0.494 |
Var 36h I row2-row1 | 0.84975 | 1 |
Var 36h NI row2-row1 | 1.40047 | 0.276 |
Var 60h I row2-row1 | 0.85934 | 0.582 |
Var 60h NI row2-row1 | 0.95666 | 1 |
Time course 0hI-0hNI | 1.06091 | 0.719 |
Time course 12hI-12hNI | 0.92702 | 0.316 |
Time course 36hI-36hNI | 0.86927 | 0.136 |
Time course 60hI-60hNI | 0.21846 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99334 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.15953 | 1 |
transgenic ySAMdc/azygous control (red) | 1.17565 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96426 | 0.168 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.86452 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.13577 | 0.09 |
Manapal/WT (break) | 1.75061 | 0.13 |
Manapal/WT (red) | 1.84021 | 0.142 |
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