Expression of 1-1-6.4.14.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.379140.037
27DAP/17DAP1.51650.556
39DAP/27DAP1.572830.228
41DAP/39DAP0.966080.837
42DAP/41DAP0.789780.397
43DAP/42DAP0.985480.931
47DAP/43DAP0.890780.628
52DAP/47DAP1.334140.601
57DAP/52DAP1.147320.77

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.868630.078
17DAP/reference0.986620.737
27DAP/reference1.167610.205
39DAP/reference1.400620.018
41DAP/reference1.14840.365
42DAP/reference0.946350.115
43DAP/reference1.004511
47DAP/reference1.275910.175
52DAP/reference1.174990.167
57DAP/reference1.245370.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.927560.496
27DAP/17DAP0.973120.887
39DAP/27DAP1.245390.378
41DAP/39DAP1.085880.656
42DAP/41DAP0.958130.693
43DAP/42DAP1.029760.699
47DAP/43DAP0.933180.666
52DAP/47DAP0.941830.66
57DAP/52DAP0.938510.532
57DAP/7DAP1.497941

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850390.115
17DAP/reference1.088170.328
27DAP/reference1.451090.015
39DAP/reference0.992670.64
41DAP/reference0.986490.619
42DAP/reference2.054140.008
43DAP/reference1.837880.007
47DAP/reference1.489540.016
52DAP/reference1.677670.026
57DAP/reference1.436250.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.503390.384
17DAP/reference1.257670.131
27DAP/reference1.443670.032
39DAP/reference1.602870.011
41DAP/reference1.154310.149
42DAP/reference1.495220.007
43DAP/reference2.219060.014
47DAP/reference1.585950.008
52DAP/reference1.800260.006
57DAP/reference1.298660.057

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.791990.039
17DAP/reference0.944060.389
27DAP/reference0.973740.416
39DAP/reference1.091950.496
41DAP/reference1.168550.181
42DAP/reference1.298910.018
43DAP/reference1.069921
47DAP/reference1.304320.034
52DAP/reference1.284980.09
57DAP/reference1.50030.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993311
26DAP/20DAP1.077540.826
34DAP/26DAP1.405970.304
51DAP/34DAP1.024010.98
52DAP/51DAP0.96071
53DAP/52DAP0.988880.909
55DAP/53DAP0.942220.675
57DAP/55DAP0.831320.508
62DAP/57DAP0.877850.28
68DAP/62DAP0.81840.641
68DAP/14DAP1.362430.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.998650.029

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.936560.605
Mature Green Tomato/Ripe Tomato0.890080.411
Immature Eggplant/Mature Eggplant1.533360.05
Ripe Pepper/Ripe Tomato1.180861
Mature Eggplant/Ripe Tomato0.53621

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.790770.581
1-1-2/M820.995681
12-2/M820.822290.862
12-4/M820.931861
1-3/M821.390370.26
2-1-1/M820.942911
2-1/M820.823840.322
2-6/M820.895220.501
3-2/M821.194820.443
4-1-1/M821.105171
4-1/M821.00507
4-3-2/M820.905480.698
4-3/M821.014631
5-3/M820.964991
6-2/M820.617810.481
6-3/M821.027481
7-1/M821.095781
7-2/M821.013861
9-3-2/M821.51421

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.71594
IL2-6/WTpooled0.903650.348
IL7-5/WTpooled1.384230.792
IL7-3/WTpooled1.025081
IL12-4/WTpooled1.049470.673
IL1-4/WTpooled1.233741
WT/WTpooled0.937561

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.297740.148

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.002361
DC3000/delta hrp 6h0.900840.95
DC3000/delta hrp 12h1.17008
DC3000/delta hrp 24h1.07570.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.489830.308

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.177811
Exp 36h1.070561
Exp 60h1.168620.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.116881
Var 0h1.151320.421
Var 12h I row2-row11.047190.692
Var 12h NI row2-row11.063181
Var 36h I row2-row11.188930.908
Var 36h NI row2-row10.906050.743
Var 60h I row2-row10.719290.439
Var 60h NI row2-row10.838920.359
Time course 0hI-0hNI1.045430.852
Time course 12hI-12hNI1.401680.013
Time course 36hI-36hNI1.924250.005
Time course 60hI-60hNI2.693610.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.99720.931
transgenic ySAMdc/azygous control (breaker)0.673250.142
transgenic ySAMdc/azygous control (red)0.766821

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.44640.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.747550.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.823090.172
Manapal/WT (break)1.425171
Manapal/WT (red)1.143810.222