Expression of 1-1-6.4.14.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.37914 | 0.037 |
27DAP/17DAP | 1.5165 | 0.556 |
39DAP/27DAP | 1.57283 | 0.228 |
41DAP/39DAP | 0.96608 | 0.837 |
42DAP/41DAP | 0.78978 | 0.397 |
43DAP/42DAP | 0.98548 | 0.931 |
47DAP/43DAP | 0.89078 | 0.628 |
52DAP/47DAP | 1.33414 | 0.601 |
57DAP/52DAP | 1.14732 | 0.77 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86863 | 0.078 |
17DAP/reference | 0.98662 | 0.737 |
27DAP/reference | 1.16761 | 0.205 |
39DAP/reference | 1.40062 | 0.018 |
41DAP/reference | 1.1484 | 0.365 |
42DAP/reference | 0.94635 | 0.115 |
43DAP/reference | 1.00451 | 1 |
47DAP/reference | 1.27591 | 0.175 |
52DAP/reference | 1.17499 | 0.167 |
57DAP/reference | 1.24537 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92756 | 0.496 |
27DAP/17DAP | 0.97312 | 0.887 |
39DAP/27DAP | 1.24539 | 0.378 |
41DAP/39DAP | 1.08588 | 0.656 |
42DAP/41DAP | 0.95813 | 0.693 |
43DAP/42DAP | 1.02976 | 0.699 |
47DAP/43DAP | 0.93318 | 0.666 |
52DAP/47DAP | 0.94183 | 0.66 |
57DAP/52DAP | 0.93851 | 0.532 |
57DAP/7DAP | 1.49794 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85039 | 0.115 |
17DAP/reference | 1.08817 | 0.328 |
27DAP/reference | 1.45109 | 0.015 |
39DAP/reference | 0.99267 | 0.64 |
41DAP/reference | 0.98649 | 0.619 |
42DAP/reference | 2.05414 | 0.008 |
43DAP/reference | 1.83788 | 0.007 |
47DAP/reference | 1.48954 | 0.016 |
52DAP/reference | 1.67767 | 0.026 |
57DAP/reference | 1.43625 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50339 | 0.384 |
17DAP/reference | 1.25767 | 0.131 |
27DAP/reference | 1.44367 | 0.032 |
39DAP/reference | 1.60287 | 0.011 |
41DAP/reference | 1.15431 | 0.149 |
42DAP/reference | 1.49522 | 0.007 |
43DAP/reference | 2.21906 | 0.014 |
47DAP/reference | 1.58595 | 0.008 |
52DAP/reference | 1.80026 | 0.006 |
57DAP/reference | 1.29866 | 0.057 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79199 | 0.039 |
17DAP/reference | 0.94406 | 0.389 |
27DAP/reference | 0.97374 | 0.416 |
39DAP/reference | 1.09195 | 0.496 |
41DAP/reference | 1.16855 | 0.181 |
42DAP/reference | 1.29891 | 0.018 |
43DAP/reference | 1.06992 | 1 |
47DAP/reference | 1.30432 | 0.034 |
52DAP/reference | 1.28498 | 0.09 |
57DAP/reference | 1.5003 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99331 | 1 |
26DAP/20DAP | 1.07754 | 0.826 |
34DAP/26DAP | 1.40597 | 0.304 |
51DAP/34DAP | 1.02401 | 0.98 |
52DAP/51DAP | 0.9607 | 1 |
53DAP/52DAP | 0.98888 | 0.909 |
55DAP/53DAP | 0.94222 | 0.675 |
57DAP/55DAP | 0.83132 | 0.508 |
62DAP/57DAP | 0.87785 | 0.28 |
68DAP/62DAP | 0.8184 | 0.641 |
68DAP/14DAP | 1.36243 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.99865 | 0.029 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93656 | 0.605 |
Mature Green Tomato/Ripe Tomato | 0.89008 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.53336 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.18086 | 1 |
Mature Eggplant/Ripe Tomato | 0.5362 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.79077 | 0.581 |
1-1-2/M82 | 0.99568 | 1 |
12-2/M82 | 0.82229 | 0.862 |
12-4/M82 | 0.93186 | 1 |
1-3/M82 | 1.39037 | 0.26 |
2-1-1/M82 | 0.94291 | 1 |
2-1/M82 | 0.82384 | 0.322 |
2-6/M82 | 0.89522 | 0.501 |
3-2/M82 | 1.19482 | 0.443 |
4-1-1/M82 | 1.10517 | 1 |
4-1/M82 | 1.00507 | |
4-3-2/M82 | 0.90548 | 0.698 |
4-3/M82 | 1.01463 | 1 |
5-3/M82 | 0.96499 | 1 |
6-2/M82 | 0.61781 | 0.481 |
6-3/M82 | 1.02748 | 1 |
7-1/M82 | 1.09578 | 1 |
7-2/M82 | 1.01386 | 1 |
9-3-2/M82 | 1.5142 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.71594 | |
IL2-6/WTpooled | 0.90365 | 0.348 |
IL7-5/WTpooled | 1.38423 | 0.792 |
IL7-3/WTpooled | 1.02508 | 1 |
IL12-4/WTpooled | 1.04947 | 0.673 |
IL1-4/WTpooled | 1.23374 | 1 |
WT/WTpooled | 0.93756 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.29774 | 0.148 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00236 | 1 |
DC3000/delta hrp 6h | 0.90084 | 0.95 |
DC3000/delta hrp 12h | 1.17008 | |
DC3000/delta hrp 24h | 1.0757 | 0.283 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.48983 | 0.308 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17781 | 1 |
Exp 36h | 1.07056 | 1 |
Exp 60h | 1.16862 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.11688 | 1 |
Var 0h | 1.15132 | 0.421 |
Var 12h I row2-row1 | 1.04719 | 0.692 |
Var 12h NI row2-row1 | 1.06318 | 1 |
Var 36h I row2-row1 | 1.18893 | 0.908 |
Var 36h NI row2-row1 | 0.90605 | 0.743 |
Var 60h I row2-row1 | 0.71929 | 0.439 |
Var 60h NI row2-row1 | 0.83892 | 0.359 |
Time course 0hI-0hNI | 1.04543 | 0.852 |
Time course 12hI-12hNI | 1.40168 | 0.013 |
Time course 36hI-36hNI | 1.92425 | 0.005 |
Time course 60hI-60hNI | 2.69361 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9972 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 0.67325 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.76682 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.4464 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74755 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.82309 | 0.172 |
Manapal/WT (break) | 1.42517 | 1 |
Manapal/WT (red) | 1.14381 | 0.222 |
|
|