Expression of 1-1-6.4.15.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.30116 | 0.014 |
27DAP/17DAP | 0.74194 | 0.256 |
39DAP/27DAP | 1.72088 | 0.031 |
41DAP/39DAP | 0.65262 | 0.094 |
42DAP/41DAP | 1.00938 | 1 |
43DAP/42DAP | 1.66823 | 0.26 |
47DAP/43DAP | 0.21901 | 0.04 |
52DAP/47DAP | 0.64589 | 0.241 |
57DAP/52DAP | 1.26312 | 0.873 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43012 | 0.007 |
17DAP/reference | 0.95429 | 0.18 |
27DAP/reference | 1.11641 | 0.2 |
39DAP/reference | 0.95348 | 0.565 |
41DAP/reference | 0.8975 | 0.085 |
42DAP/reference | 1.07202 | 0.13 |
43DAP/reference | 0.87061 | 0.118 |
47DAP/reference | 0.77214 | 0.014 |
52DAP/reference | 0.8238 | 0.158 |
57DAP/reference | 1.20753 | 0.04 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.32375 | 0.024 |
27DAP/17DAP | 1.28969 | 0.105 |
39DAP/27DAP | 1.1095 | 0.499 |
41DAP/39DAP | 0.34998 | 0.013 |
42DAP/41DAP | 1.30479 | 0.291 |
43DAP/42DAP | 3.10152 | 0.013 |
47DAP/43DAP | 0.49195 | 0.008 |
52DAP/47DAP | 0.5072 | 0.041 |
57DAP/52DAP | 0.83936 | 0.371 |
57DAP/7DAP | 0.16318 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.22387 | 0.024 |
17DAP/reference | 1.83432 | 0.01 |
27DAP/reference | 0.81637 | 0.01 |
39DAP/reference | 1.26454 | 0.015 |
41DAP/reference | 0.80593 | 0.047 |
42DAP/reference | 1.30635 | 0.308 |
43DAP/reference | 0.74904 | 0.038 |
47DAP/reference | 1.17749 | 0.571 |
52DAP/reference | 0.3349 | 0.009 |
57DAP/reference | 0.32869 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63249 | 0.058 |
17DAP/reference | 1.40382 | 0.039 |
27DAP/reference | 0.92194 | 0.352 |
39DAP/reference | 0.91299 | 0.11 |
41DAP/reference | 0.72503 | 0.013 |
42DAP/reference | 1.10044 | 0.281 |
43DAP/reference | 0.63874 | 0.009 |
47DAP/reference | 0.81106 | 0.064 |
52DAP/reference | 0.8764 | 0.034 |
57DAP/reference | 0.60212 | 0.006 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.79083 | 0.016 |
17DAP/reference | 1.65708 | 0.253 |
27DAP/reference | 1.57429 | 0.029 |
39DAP/reference | 1.21051 | 0.353 |
41DAP/reference | 0.82416 | 0.077 |
42DAP/reference | 1.69345 | 0.014 |
43DAP/reference | 1.16877 | 0.426 |
47DAP/reference | 0.51585 | 0.004 |
52DAP/reference | 0.38966 | 0.047 |
57DAP/reference | 0.6245 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90616 | 1 |
26DAP/20DAP | 0.78664 | 0.244 |
34DAP/26DAP | 1.19823 | 0.819 |
51DAP/34DAP | 1.5342 | 0.137 |
52DAP/51DAP | 0.90102 | 1 |
53DAP/52DAP | 1.036 | 0.935 |
55DAP/53DAP | 0.98977 | 0.876 |
57DAP/55DAP | 1.1372 | 0.51 |
62DAP/57DAP | 1.06404 | 0.868 |
68DAP/62DAP | 1.24348 | 0.7 |
68DAP/14DAP | 1.18893 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 7.56212 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 14.5248 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.17225 | 0.04 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 2.87744 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.74407 | 0.883 |
1-1-2/M82 | 1.26858 | 1 |
12-2/M82 | 1.20536 | |
12-4/M82 | 0.46405 | 0.282 |
1-3/M82 | 2.82906 | 0.248 |
2-1-1/M82 | 0.56196 | 0.565 |
2-1/M82 | 0.93954 | 1 |
2-6/M82 | 1.52205 | 0.594 |
3-2/M82 | 0.44016 | 0.455 |
4-1-1/M82 | 1.12403 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.12525 | 1 |
5-3/M82 | 2.31777 | 1 |
6-2/M82 | 4.70709 | 0.235 |
6-3/M82 | 0.49613 | 0.416 |
7-1/M82 | 1.47065 | 0.87 |
7-2/M82 | 2.78944 | 0.385 |
9-3-2/M82 | 2.40465 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.17541 | 0.277 |
IL2-6/WTpooled | 0.9171 | 0.473 |
IL7-5/WTpooled | 0.93123 | 1 |
IL7-3/WTpooled | 0.94119 | 0.298 |
IL12-4/WTpooled | 1.27067 | 0.516 |
IL1-4/WTpooled | 1.14401 | 1 |
WT/WTpooled | 1.1054 | 0.789 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89982 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98788 | 1 |
DC3000/delta hrp 6h | 1.1307 | 1 |
DC3000/delta hrp 12h | 1.68353 | 1 |
DC3000/delta hrp 24h | 0.58238 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19542 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.85705 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81967 | 1 |
Exp 36h | 1.00978 | 1 |
Exp 60h | 1.11724 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99846 | 1 |
Var 0h | 1.41954 | 0.374 |
Var 12h I row2-row1 | 0.94763 | 0.856 |
Var 12h NI row2-row1 | 1.12973 | 1 |
Var 36h I row2-row1 | 1.19859 | 1 |
Var 36h NI row2-row1 | 0.96984 | 0.791 |
Var 60h I row2-row1 | 1.04236 | 1 |
Var 60h NI row2-row1 | 0.89995 | 0.866 |
Time course 0hI-0hNI | 0.84349 | 0.132 |
Time course 12hI-12hNI | 0.76062 | 0.033 |
Time course 36hI-36hNI | 1.23785 | 0.768 |
Time course 60hI-60hNI | 0.90341 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.39994 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 1.41942 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.85882 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15616 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05951 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.69822 | 0.14 |
Manapal/WT (break) | 1.73444 | 1 |
Manapal/WT (red) | 0.67804 | 0.36 |
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