Expression of 1-1-6.4.15.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.301160.014
27DAP/17DAP0.741940.256
39DAP/27DAP1.720880.031
41DAP/39DAP0.652620.094
42DAP/41DAP1.009381
43DAP/42DAP1.668230.26
47DAP/43DAP0.219010.04
52DAP/47DAP0.645890.241
57DAP/52DAP1.263120.873

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.430120.007
17DAP/reference0.954290.18
27DAP/reference1.116410.2
39DAP/reference0.953480.565
41DAP/reference0.89750.085
42DAP/reference1.072020.13
43DAP/reference0.870610.118
47DAP/reference0.772140.014
52DAP/reference0.82380.158
57DAP/reference1.207530.04

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.323750.024
27DAP/17DAP1.289690.105
39DAP/27DAP1.10950.499
41DAP/39DAP0.349980.013
42DAP/41DAP1.304790.291
43DAP/42DAP3.101520.013
47DAP/43DAP0.491950.008
52DAP/47DAP0.50720.041
57DAP/52DAP0.839360.371
57DAP/7DAP0.163180.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.223870.024
17DAP/reference1.834320.01
27DAP/reference0.816370.01
39DAP/reference1.264540.015
41DAP/reference0.805930.047
42DAP/reference1.306350.308
43DAP/reference0.749040.038
47DAP/reference1.177490.571
52DAP/reference0.33490.009
57DAP/reference0.328690.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.632490.058
17DAP/reference1.403820.039
27DAP/reference0.921940.352
39DAP/reference0.912990.11
41DAP/reference0.725030.013
42DAP/reference1.100440.281
43DAP/reference0.638740.009
47DAP/reference0.811060.064
52DAP/reference0.87640.034
57DAP/reference0.602120.006

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.790830.016
17DAP/reference1.657080.253
27DAP/reference1.574290.029
39DAP/reference1.210510.353
41DAP/reference0.824160.077
42DAP/reference1.693450.014
43DAP/reference1.168770.426
47DAP/reference0.515850.004
52DAP/reference0.389660.047
57DAP/reference0.62450.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.906161
26DAP/20DAP0.786640.244
34DAP/26DAP1.198230.819
51DAP/34DAP1.53420.137
52DAP/51DAP0.901021
53DAP/52DAP1.0360.935
55DAP/53DAP0.989770.876
57DAP/55DAP1.13720.51
62DAP/57DAP1.064040.868
68DAP/62DAP1.243480.7
68DAP/14DAP1.188930.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker7.562120.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato14.52480.015
Immature Eggplant/Mature Eggplant0.172250.04
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato2.87744

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.744070.883
1-1-2/M821.268581
12-2/M821.20536
12-4/M820.464050.282
1-3/M822.829060.248
2-1-1/M820.561960.565
2-1/M820.939541
2-6/M821.522050.594
3-2/M820.440160.455
4-1-1/M821.12403
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.125251
5-3/M822.317771
6-2/M824.707090.235
6-3/M820.496130.416
7-1/M821.470650.87
7-2/M822.789440.385
9-3-2/M822.404650.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.175410.277
IL2-6/WTpooled0.91710.473
IL7-5/WTpooled0.931231
IL7-3/WTpooled0.941190.298
IL12-4/WTpooled1.270670.516
IL1-4/WTpooled1.144011
WT/WTpooled1.10540.789

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.899820.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.987881
DC3000/delta hrp 6h1.13071
DC3000/delta hrp 12h1.683531
DC3000/delta hrp 24h0.582380.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.195420.094
DC3000 delta B/DC3000 delta AB1.857050.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.819671
Exp 36h1.009781
Exp 60h1.117240.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998461
Var 0h1.419540.374
Var 12h I row2-row10.947630.856
Var 12h NI row2-row11.129731
Var 36h I row2-row11.198591
Var 36h NI row2-row10.969840.791
Var 60h I row2-row11.042361
Var 60h NI row2-row10.899950.866
Time course 0hI-0hNI0.843490.132
Time course 12hI-12hNI0.760620.033
Time course 36hI-36hNI1.237850.768
Time course 60hI-60hNI0.903410.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.399940.272
transgenic ySAMdc/azygous control (breaker)1.419420.248
transgenic ySAMdc/azygous control (red)0.858821

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.156160.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.059511

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.698220.14
Manapal/WT (break)1.734441
Manapal/WT (red)0.678040.36