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Expression of 1-1-6.4.15.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.097670.67
27DAP/17DAP1.058770.926
39DAP/27DAP0.941530.652
41DAP/39DAP1.174510.735
42DAP/41DAP1.197470.843
43DAP/42DAP1.052791
47DAP/43DAP1.144410.856
52DAP/47DAP0.843730.593
57DAP/52DAP0.999440.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.02980.735
17DAP/reference1.060610.077
27DAP/reference1.049980.271
39DAP/reference1.049990.104
41DAP/reference1.031660.552
42DAP/reference0.994580.501
43DAP/reference0.925850.429
47DAP/reference0.995360.602
52DAP/reference0.973180.504
57DAP/reference0.968130.479

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.953910.496
27DAP/17DAP0.978140.821
39DAP/27DAP0.97240.682
41DAP/39DAP1.014520.887
42DAP/41DAP0.954360.572
43DAP/42DAP1.050540.176
47DAP/43DAP0.994220.985
52DAP/47DAP0.977910.884
57DAP/52DAP0.992160.848
57DAP/7DAP1.018960.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.065170.793
17DAP/reference0.902380.124
27DAP/reference0.943060.231
39DAP/reference1.058920.511
41DAP/reference0.968270.449
42DAP/reference1.058081
43DAP/reference0.916680.126
47DAP/reference0.990331
52DAP/reference1.051361
57DAP/reference1.134590.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.985630.77
17DAP/reference0.978970.548
27DAP/reference0.88870.16
39DAP/reference0.89850.178
41DAP/reference0.874850.096
42DAP/reference0.943220.321
43DAP/reference0.865860.051
47DAP/reference1.097690.232
52DAP/reference0.942480.131
57DAP/reference0.874330.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.083740.758
17DAP/reference1.001290.855
27DAP/reference1.019941
39DAP/reference1.092460.711
41DAP/reference1.15630.605
42DAP/reference1.265440.373
43DAP/reference1.329370.28
47DAP/reference0.905640.231
52DAP/reference1.119320.664
57DAP/reference0.743270.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.040.966
26DAP/20DAP1.012371
34DAP/26DAP0.97720.936
51DAP/34DAP1.030850.829
52DAP/51DAP0.963551
53DAP/52DAP1.071330.458
55DAP/53DAP0.939470.203
57DAP/55DAP0.978730.888
62DAP/57DAP0.957520.681
68DAP/62DAP1.001410.939
68DAP/14DAP1.061281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.038570.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.534870.089
Mature Green Tomato/Ripe Tomato0.962130.66
Immature Eggplant/Mature Eggplant0.951710.72
Ripe Pepper/Ripe Tomato1.56240.256
Mature Eggplant/Ripe Tomato1.930341

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.965540.907
1-1-2/M820.954540.958
12-2/M820.972390.955
12-4/M820.968221
1-3/M820.935210.501
2-1-1/M821.08970.764
2-1/M821.336911
2-6/M821.024621
3-2/M821.022811
4-1-1/M821.043811
4-1/M821.025081
4-3-2/M820.987681
4-3/M821.036931
5-3/M820.985061
6-2/M821.013491
6-3/M820.988661
7-1/M821.023810.925
7-2/M820.953330.881
9-3-2/M820.884121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.83087N/A
IL2-6/WTpooled1.502770.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.929841
IL12-4/WTpooled1.379970.424
IL1-4/WTpooled2.102191
WT/WTpooled1.020251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.26736N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.911771
DC3000/delta hrp 6h1.190921
DC3000/delta hrp 12h0.981261
DC3000/delta hrp 24h1.043750.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.224530.042
DC3000 delta B/DC3000 delta AB1.180310.265

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.827931
Exp 36h0.888340.661
Exp 60h0.9160.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010321
Var 0h0.445740.933
Var 12h I row2-row11.061720.406
Var 12h NI row2-row10.948030.82
Var 36h I row2-row11.107281
Var 36h NI row2-row10.991280.852
Var 60h I row2-row11.102710.562
Var 60h NI row2-row11.263680.904
Time course 0hI-0hNI1.016611
Time course 12hI-12hNI1.049120.724
Time course 36hI-36hNI0.990990.68
Time course 60hI-60hNI1.28360.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.257020.318
transgenic ySAMdc/azygous control (breaker)1.572130.178
transgenic ySAMdc/azygous control (red)1.025311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.961660.07

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.219661

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.608960.14
Manapal/WT (break)2.784911
Manapal/WT (red)0.711240.181