Expression of 1-1-6.4.15.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9311 | 0.64 |
27DAP/17DAP | 0.95398 | 0.945 |
39DAP/27DAP | 1.32065 | 0.675 |
41DAP/39DAP | 1.74883 | 0.125 |
42DAP/41DAP | 0.67552 | 0.774 |
43DAP/42DAP | 0.85738 | 0.773 |
47DAP/43DAP | 1.15531 | 0.856 |
52DAP/47DAP | 0.83174 | 0.543 |
57DAP/52DAP | 0.74509 | 0.583 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91642 | 0.217 |
17DAP/reference | 0.92005 | 0.111 |
27DAP/reference | 1.08596 | 0.19 |
39DAP/reference | 0.96973 | 0.638 |
41DAP/reference | 0.93526 | 0.267 |
42DAP/reference | 0.96971 | 0.268 |
43DAP/reference | 0.94911 | 0.555 |
47DAP/reference | 0.98449 | 0.473 |
52DAP/reference | 1.09581 | 0.548 |
57DAP/reference | 1.27538 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81103 | 0.219 |
27DAP/17DAP | 1.17509 | 0.677 |
39DAP/27DAP | 1.26972 | 0.249 |
41DAP/39DAP | 0.89015 | 0.662 |
42DAP/41DAP | 1.0519 | 0.947 |
43DAP/42DAP | 1.28332 | 0.147 |
47DAP/43DAP | 1.22323 | 0.14 |
52DAP/47DAP | 0.91049 | 0.634 |
57DAP/52DAP | 0.80435 | 0.113 |
57DAP/7DAP | 1.22567 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89527 | 0.203 |
17DAP/reference | 0.82171 | 0.025 |
27DAP/reference | 0.9569 | 0.375 |
39DAP/reference | 0.79435 | 0.025 |
41DAP/reference | 0.93938 | 0.311 |
42DAP/reference | 0.8807 | 0.013 |
43DAP/reference | 0.82149 | 0.028 |
47DAP/reference | 0.94818 | 0.504 |
52DAP/reference | 0.88476 | 0.115 |
57DAP/reference | 0.90132 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95828 | 0.564 |
17DAP/reference | 0.82342 | 0.047 |
27DAP/reference | 0.89297 | 0.249 |
39DAP/reference | 0.77219 | 0.018 |
41DAP/reference | 0.95708 | 0.331 |
42DAP/reference | 0.927 | 0.261 |
43DAP/reference | 0.9245 | 0.285 |
47DAP/reference | 1.04559 | 0.841 |
52DAP/reference | 0.97628 | 0.302 |
57DAP/reference | 0.83585 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90362 | 0.135 |
17DAP/reference | 0.91251 | 0.305 |
27DAP/reference | 0.86543 | 0.133 |
39DAP/reference | 0.77951 | 0.018 |
41DAP/reference | 0.93562 | 0.371 |
42DAP/reference | 0.85814 | 0.071 |
43DAP/reference | 0.83892 | 0.037 |
47DAP/reference | 0.94354 | 0.231 |
52DAP/reference | 0.86756 | 0.319 |
57DAP/reference | 0.92314 | 0.278 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0036 | 1 |
26DAP/20DAP | 0.78663 | 0.244 |
34DAP/26DAP | 1.09132 | 1 |
51DAP/34DAP | 0.92937 | 0.714 |
52DAP/51DAP | 1.08045 | 0.77 |
53DAP/52DAP | 1.08646 | 0.565 |
55DAP/53DAP | 0.99569 | 0.908 |
57DAP/55DAP | 0.98899 | 0.911 |
62DAP/57DAP | 1.20663 | 0.217 |
68DAP/62DAP | 1.04793 | 1 |
68DAP/14DAP | 1.0515 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.27022 | 0.064 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.47533 | 0.033 |
Immature Eggplant/Mature Eggplant | 15.6973 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.45722 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.58497 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0725 | 0.742 |
1-1-2/M82 | 0.90971 | 1 |
12-2/M82 | 1.17434 | 1 |
12-4/M82 | 0.83145 | 1 |
1-3/M82 | 1.01411 | 1 |
2-1-1/M82 | 1.80865 | 0.439 |
2-1/M82 | 3.99354 | 0.328 |
2-6/M82 | 1.0846 | 0.505 |
3-2/M82 | 0.90805 | |
4-1-1/M82 | 1.00221 | 1 |
4-1/M82 | 1.04227 | 1 |
4-3-2/M82 | 1.04044 | 0.508 |
4-3/M82 | 1.05695 | 1 |
5-3/M82 | 1.00781 | 1 |
6-2/M82 | 0.84902 | 0.497 |
6-3/M82 | 0.99668 | 1 |
7-1/M82 | 0.94175 | 1 |
7-2/M82 | 1.02455 | 1 |
9-3-2/M82 | 0.95022 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1789 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.1371 | 1 |
IL7-3/WTpooled | 1.14996 | |
IL12-4/WTpooled | 1.29448 | 0.553 |
IL1-4/WTpooled | 1.15404 | 1 |
WT/WTpooled | 1.071 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.63347 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01378 | 1 |
DC3000/delta hrp 6h | 1.42825 | 0.672 |
DC3000/delta hrp 12h | 1.31718 | 1 |
DC3000/delta hrp 24h | 1.34009 | 0.103 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.85267 | |
DC3000 delta B/DC3000 delta AB | 1.52978 | 0.147 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17558 | 1 |
Exp 36h | 2.3408 | 0.693 |
Exp 60h | 1.62812 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96801 | 1 |
Var 0h | 0.89248 | 0.933 |
Var 12h I row2-row1 | 1.14725 | 0.216 |
Var 12h NI row2-row1 | 0.80932 | 0.494 |
Var 36h I row2-row1 | 1.04875 | 1 |
Var 36h NI row2-row1 | 1.01247 | 1 |
Var 60h I row2-row1 | 1.19591 | 0.543 |
Var 60h NI row2-row1 | 1.27682 | 0.904 |
Time course 0hI-0hNI | 1.10165 | 0.799 |
Time course 12hI-12hNI | 1.08085 | 0.724 |
Time course 36hI-36hNI | 1.13083 | 0.19 |
Time course 60hI-60hNI | 2.62403 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.34227 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 0.56798 | 0.142 |
transgenic ySAMdc/azygous control (red) | 1.13061 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01614 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01979 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73895 | 1 |
Manapal/WT (break) | 1.02887 | 1 |
Manapal/WT (red) | 0.40249 | 0.181 |
|
|