Expression of 1-1-6.4.15.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.93110.64
27DAP/17DAP0.953980.945
39DAP/27DAP1.320650.675
41DAP/39DAP1.748830.125
42DAP/41DAP0.675520.774
43DAP/42DAP0.857380.773
47DAP/43DAP1.155310.856
52DAP/47DAP0.831740.543
57DAP/52DAP0.745090.583

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.916420.217
17DAP/reference0.920050.111
27DAP/reference1.085960.19
39DAP/reference0.969730.638
41DAP/reference0.935260.267
42DAP/reference0.969710.268
43DAP/reference0.949110.555
47DAP/reference0.984490.473
52DAP/reference1.095810.548
57DAP/reference1.275380.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.811030.219
27DAP/17DAP1.175090.677
39DAP/27DAP1.269720.249
41DAP/39DAP0.890150.662
42DAP/41DAP1.05190.947
43DAP/42DAP1.283320.147
47DAP/43DAP1.223230.14
52DAP/47DAP0.910490.634
57DAP/52DAP0.804350.113
57DAP/7DAP1.225671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895270.203
17DAP/reference0.821710.025
27DAP/reference0.95690.375
39DAP/reference0.794350.025
41DAP/reference0.939380.311
42DAP/reference0.88070.013
43DAP/reference0.821490.028
47DAP/reference0.948180.504
52DAP/reference0.884760.115
57DAP/reference0.901320.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.958280.564
17DAP/reference0.823420.047
27DAP/reference0.892970.249
39DAP/reference0.772190.018
41DAP/reference0.957080.331
42DAP/reference0.9270.261
43DAP/reference0.92450.285
47DAP/reference1.045590.841
52DAP/reference0.976280.302
57DAP/reference0.835850.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.903620.135
17DAP/reference0.912510.305
27DAP/reference0.865430.133
39DAP/reference0.779510.018
41DAP/reference0.935620.371
42DAP/reference0.858140.071
43DAP/reference0.838920.037
47DAP/reference0.943540.231
52DAP/reference0.867560.319
57DAP/reference0.923140.278

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.00361
26DAP/20DAP0.786630.244
34DAP/26DAP1.091321
51DAP/34DAP0.929370.714
52DAP/51DAP1.080450.77
53DAP/52DAP1.086460.565
55DAP/53DAP0.995690.908
57DAP/55DAP0.988990.911
62DAP/57DAP1.206630.217
68DAP/62DAP1.047931
68DAP/14DAP1.05150.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.270220.064

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.475330.033
Immature Eggplant/Mature Eggplant15.69730.05
Ripe Pepper/Ripe Tomato0.457220.224
Mature Eggplant/Ripe Tomato0.584971

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.07250.742
1-1-2/M820.909711
12-2/M821.174341
12-4/M820.831451
1-3/M821.014111
2-1-1/M821.808650.439
2-1/M823.993540.328
2-6/M821.08460.505
3-2/M820.90805
4-1-1/M821.002211
4-1/M821.042271
4-3-2/M821.040440.508
4-3/M821.056951
5-3/M821.007811
6-2/M820.849020.497
6-3/M820.996681
7-1/M820.941751
7-2/M821.024551
9-3-2/M820.950221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.1789
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.13711
IL7-3/WTpooled1.14996
IL12-4/WTpooled1.294480.553
IL1-4/WTpooled1.154041
WT/WTpooled1.0711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.633470.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013781
DC3000/delta hrp 6h1.428250.672
DC3000/delta hrp 12h1.317181
DC3000/delta hrp 24h1.340090.103

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.85267
DC3000 delta B/DC3000 delta AB1.529780.147

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.175581
Exp 36h2.34080.693
Exp 60h1.628120.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968011
Var 0h0.892480.933
Var 12h I row2-row11.147250.216
Var 12h NI row2-row10.809320.494
Var 36h I row2-row11.048751
Var 36h NI row2-row11.012471
Var 60h I row2-row11.195910.543
Var 60h NI row2-row11.276820.904
Time course 0hI-0hNI1.101650.799
Time course 12hI-12hNI1.080850.724
Time course 36hI-36hNI1.130830.19
Time course 60hI-60hNI2.624030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.342270.699
transgenic ySAMdc/azygous control (breaker)0.567980.142
transgenic ySAMdc/azygous control (red)1.130610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016140.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.019791

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.738951
Manapal/WT (break)1.028871
Manapal/WT (red)0.402490.181