Expression of 1-1-6.4.16.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.077090.755
27DAP/17DAP1.065360.857
39DAP/27DAP2.033230.718
41DAP/39DAP1.81330.765
42DAP/41DAP3.645690.582
43DAP/42DAP1.40870.873
47DAP/43DAP1.461770.873
52DAP/47DAP1.208130.943
57DAP/52DAP0.939650.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.784680.057
17DAP/reference0.60740.022
27DAP/reference0.459660.019
39DAP/reference0.453260.039
41DAP/reference0.470050.021
42DAP/reference0.529160.019
43DAP/reference0.379910.051
47DAP/reference0.480180.002
52DAP/reference0.646630.135
57DAP/reference0.51613

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.946820.679
27DAP/17DAP0.96530.943
39DAP/27DAP10.8363
41DAP/39DAP0.81251
42DAP/41DAP2.74602
43DAP/42DAP0.6903
47DAP/43DAP1.1512
52DAP/47DAPN/AN/A
57DAP/52DAPN/AN/A
57DAP/7DAP1.175321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.097830.501
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.96991
41DAP/reference0.47938
42DAP/reference1.62831
43DAP/referenceN/AN/A
47DAP/reference0.683650.079
52DAP/reference1.013980.802
57DAP/reference0.40171

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.722380.257
17DAP/reference0.781210.041
27DAP/reference0.806520.366
39DAP/reference0.507060.008
41DAP/reference1.094190.666
42DAP/reference0.901910.534
43DAP/reference0.494620.005
47DAP/reference0.37910.024
52DAP/reference0.291220.016
57DAP/reference0.520550.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.39689
17DAP/reference1.84730.011
27DAP/reference0.99477
39DAP/reference0.787890.328
41DAP/referenceN/AN/A
42DAP/reference0.48867
43DAP/reference0.859380.523
47DAP/reference0.491410.004
52DAP/reference1.016280.663
57DAP/reference0.652860.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.000081
26DAP/20DAP0.49746
34DAP/26DAPN/AN/A
51DAP/34DAP1.032430.937
52DAP/51DAP1.10725
53DAP/52DAP1.28540.697
55DAP/53DAP1.10445
57DAP/55DAP0.979180.902
62DAP/57DAP0.34003
68DAP/62DAP1.757010.737
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.34816

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.80291
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.949680.7

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.973520.206
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.552180.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.520490.123
Manapal/WT (red)1.515730.133