Expression of 1-1-6.4.17.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.145580.697
27DAP/17DAP1.453340.742
39DAP/27DAP0.954820.682
41DAP/39DAP1.133670.293
42DAP/41DAP1.428740.493
43DAP/42DAP0.927180.858
47DAP/43DAP1.131670.715
52DAP/47DAP1.148270.787
57DAP/52DAP0.988460.978

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008370.787
17DAP/reference1.034481
27DAP/reference0.966710.595
39DAP/reference1.110010.301
41DAP/reference1.125470.451
42DAP/reference1.132650.108
43DAP/reference0.939140.464
47DAP/reference1.203870.062
52DAP/reference1.268920.036
57DAP/reference1.013930.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.202790.085
27DAP/17DAP0.909660.363
39DAP/27DAP1.057160.672
41DAP/39DAP1.171220.719
42DAP/41DAP0.902010.362
43DAP/42DAP1.416940.478
47DAP/43DAP0.898630.195
52DAP/47DAP1.128140.669
57DAP/52DAP1.139620.813
57DAP/7DAP1.211260.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893330.326
17DAP/reference0.874420.108
27DAP/reference0.945580.283
39DAP/reference0.83560.039
41DAP/reference0.898760.107
42DAP/reference1.046710.686
43DAP/reference0.974470.48
47DAP/reference1.043270.948
52DAP/reference0.968860.435
57DAP/reference0.88160.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.832190.197
17DAP/reference1.062690.961
27DAP/reference1.055041
39DAP/reference1.010220.682
41DAP/reference1.335390.153
42DAP/reference1.343350.14
43DAP/reference1.356830.208
47DAP/reference1.254770.032
52DAP/reference1.32290.106
57DAP/reference0.977860.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.90490.158
17DAP/reference0.982180.696
27DAP/reference0.899550.119
39DAP/reference0.919920.199
41DAP/reference1.100440.714
42DAP/reference1.053140.701
43DAP/reference1.273890.308
47DAP/reference1.240990.011
52DAP/reference0.970010.65
57DAP/reference1.099990.867

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.174120.966
26DAP/20DAP1.079110.962
34DAP/26DAP0.927360.771
51DAP/34DAP0.775190.084
52DAP/51DAP1.385640.167
53DAP/52DAP1.273270.895
55DAP/53DAP0.809450.417
57DAP/55DAP1.348620.274
62DAP/57DAP1.060720.902
68DAP/62DAP0.716610.579
68DAP/14DAP1.38246

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.023080.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.154510.437
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.99028
Mature Eggplant/Ripe Tomato1.34350.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.019421
1-1-2/M821.009851
12-2/M820.747050.955
12-4/M820.713511
1-3/M821.204390.248
2-1-1/M821.226570.375
2-1/M820.82562
2-6/M821.050041
3-2/M820.921851
4-1-1/M821.03682
4-1/M821.02539
4-3-2/M821.20693
4-3/M821.203050.268
5-3/M821.211830.572
6-2/M821.05138
6-3/M820.767630.982
7-1/M820.961831
7-2/M821.135091
9-3-2/M821.155681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.60494
IL2-6/WTpooled1.074821
IL7-5/WTpooled0.970931
IL7-3/WTpooled0.69850.293
IL12-4/WTpooled0.88040.566
IL1-4/WTpooled0.953180.457
WT/WTpooled1.023761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.97271

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.08510.875
DC3000/delta hrp 6h0.99257
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.003351

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.045551
Var 0h1.100281
Var 12h I row2-row10.985131
Var 12h NI row2-row11.271010.649
Var 36h I row2-row10.926351
Var 36h NI row2-row10.782790.645
Var 60h I row2-row11.070070.562
Var 60h NI row2-row10.787040.818
Time course 0hI-0hNI1.05710.537
Time course 12hI-12hNI1.003051
Time course 36hI-36hNI0.973230.494
Time course 60hI-60hNI1.044070.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.395181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.235120.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.092881