Expression of 1-1-6.4.17.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14558 | 0.697 |
27DAP/17DAP | 1.45334 | 0.742 |
39DAP/27DAP | 0.95482 | 0.682 |
41DAP/39DAP | 1.13367 | 0.293 |
42DAP/41DAP | 1.42874 | 0.493 |
43DAP/42DAP | 0.92718 | 0.858 |
47DAP/43DAP | 1.13167 | 0.715 |
52DAP/47DAP | 1.14827 | 0.787 |
57DAP/52DAP | 0.98846 | 0.978 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00837 | 0.787 |
17DAP/reference | 1.03448 | 1 |
27DAP/reference | 0.96671 | 0.595 |
39DAP/reference | 1.11001 | 0.301 |
41DAP/reference | 1.12547 | 0.451 |
42DAP/reference | 1.13265 | 0.108 |
43DAP/reference | 0.93914 | 0.464 |
47DAP/reference | 1.20387 | 0.062 |
52DAP/reference | 1.26892 | 0.036 |
57DAP/reference | 1.01393 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20279 | 0.085 |
27DAP/17DAP | 0.90966 | 0.363 |
39DAP/27DAP | 1.05716 | 0.672 |
41DAP/39DAP | 1.17122 | 0.719 |
42DAP/41DAP | 0.90201 | 0.362 |
43DAP/42DAP | 1.41694 | 0.478 |
47DAP/43DAP | 0.89863 | 0.195 |
52DAP/47DAP | 1.12814 | 0.669 |
57DAP/52DAP | 1.13962 | 0.813 |
57DAP/7DAP | 1.21126 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89333 | 0.326 |
17DAP/reference | 0.87442 | 0.108 |
27DAP/reference | 0.94558 | 0.283 |
39DAP/reference | 0.8356 | 0.039 |
41DAP/reference | 0.89876 | 0.107 |
42DAP/reference | 1.04671 | 0.686 |
43DAP/reference | 0.97447 | 0.48 |
47DAP/reference | 1.04327 | 0.948 |
52DAP/reference | 0.96886 | 0.435 |
57DAP/reference | 0.8816 | 0.069 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83219 | 0.197 |
17DAP/reference | 1.06269 | 0.961 |
27DAP/reference | 1.05504 | 1 |
39DAP/reference | 1.01022 | 0.682 |
41DAP/reference | 1.33539 | 0.153 |
42DAP/reference | 1.34335 | 0.14 |
43DAP/reference | 1.35683 | 0.208 |
47DAP/reference | 1.25477 | 0.032 |
52DAP/reference | 1.3229 | 0.106 |
57DAP/reference | 0.97786 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9049 | 0.158 |
17DAP/reference | 0.98218 | 0.696 |
27DAP/reference | 0.89955 | 0.119 |
39DAP/reference | 0.91992 | 0.199 |
41DAP/reference | 1.10044 | 0.714 |
42DAP/reference | 1.05314 | 0.701 |
43DAP/reference | 1.27389 | 0.308 |
47DAP/reference | 1.24099 | 0.011 |
52DAP/reference | 0.97001 | 0.65 |
57DAP/reference | 1.09999 | 0.867 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17412 | 0.966 |
26DAP/20DAP | 1.07911 | 0.962 |
34DAP/26DAP | 0.92736 | 0.771 |
51DAP/34DAP | 0.77519 | 0.084 |
52DAP/51DAP | 1.38564 | 0.167 |
53DAP/52DAP | 1.27327 | 0.895 |
55DAP/53DAP | 0.80945 | 0.417 |
57DAP/55DAP | 1.34862 | 0.274 |
62DAP/57DAP | 1.06072 | 0.902 |
68DAP/62DAP | 0.71661 | 0.579 |
68DAP/14DAP | 1.38246 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02308 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.15451 | 0.437 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.99028 | |
Mature Eggplant/Ripe Tomato | 1.3435 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01942 | 1 |
1-1-2/M82 | 1.00985 | 1 |
12-2/M82 | 0.74705 | 0.955 |
12-4/M82 | 0.71351 | 1 |
1-3/M82 | 1.20439 | 0.248 |
2-1-1/M82 | 1.22657 | 0.375 |
2-1/M82 | 0.82562 | |
2-6/M82 | 1.05004 | 1 |
3-2/M82 | 0.92185 | 1 |
4-1-1/M82 | 1.03682 | |
4-1/M82 | 1.02539 | |
4-3-2/M82 | 1.20693 | |
4-3/M82 | 1.20305 | 0.268 |
5-3/M82 | 1.21183 | 0.572 |
6-2/M82 | 1.05138 | |
6-3/M82 | 0.76763 | 0.982 |
7-1/M82 | 0.96183 | 1 |
7-2/M82 | 1.13509 | 1 |
9-3-2/M82 | 1.15568 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.60494 | |
IL2-6/WTpooled | 1.07482 | 1 |
IL7-5/WTpooled | 0.97093 | 1 |
IL7-3/WTpooled | 0.6985 | 0.293 |
IL12-4/WTpooled | 0.8804 | 0.566 |
IL1-4/WTpooled | 0.95318 | 0.457 |
WT/WTpooled | 1.02376 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9727 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0851 | 0.875 |
DC3000/delta hrp 6h | 0.99257 | |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.00335 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04555 | 1 |
Var 0h | 1.10028 | 1 |
Var 12h I row2-row1 | 0.98513 | 1 |
Var 12h NI row2-row1 | 1.27101 | 0.649 |
Var 36h I row2-row1 | 0.92635 | 1 |
Var 36h NI row2-row1 | 0.78279 | 0.645 |
Var 60h I row2-row1 | 1.07007 | 0.562 |
Var 60h NI row2-row1 | 0.78704 | 0.818 |
Time course 0hI-0hNI | 1.0571 | 0.537 |
Time course 12hI-12hNI | 1.00305 | 1 |
Time course 36hI-36hNI | 0.97323 | 0.494 |
Time course 60hI-60hNI | 1.04407 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 1.39518 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.23512 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.09288 | 1 |
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