Expression of 1-1-6.4.17.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.731090.303
27DAP/17DAP0.844550.567
39DAP/27DAP1.185770.75
41DAP/39DAP1.215860.473
42DAP/41DAP2.323340.029
43DAP/42DAP0.923650.846
47DAP/43DAP1.171530.756
52DAP/47DAP0.877970.654
57DAP/52DAP0.907750.889

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.107321
17DAP/reference0.931360.24
27DAP/reference0.933140.163
39DAP/reference1.242720.02
41DAP/reference1.209870.036
42DAP/reference1.083640.485
43DAP/reference1.00140.882
47DAP/reference1.007770.602
52DAP/reference1.330710.072
57DAP/reference1.164720.379

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.107450.473
27DAP/17DAP1.070820.805
39DAP/27DAP1.30920.072
41DAP/39DAP0.828540.03
42DAP/41DAP1.176540.514
43DAP/42DAP2.039630.019
47DAP/43DAP0.821020.131
52DAP/47DAP1.407410.21
57DAP/52DAP1.265030.325
57DAP/7DAP1.607920.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.707040.072
17DAP/reference0.8480.124
27DAP/reference0.946780.283
39DAP/reference0.763440.02
41DAP/reference0.78310.043
42DAP/reference0.825810.066
43DAP/reference1.165950.178
47DAP/reference0.94480.504
52DAP/reference1.0171
57DAP/reference2.251260.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.708560.045
17DAP/reference1.236360.644
27DAP/reference0.922140.381
39DAP/reference1.143510.477
41DAP/reference1.249050.038
42DAP/reference1.162380.105
43DAP/reference1.562380.035
47DAP/reference0.999870.678
52DAP/reference1.200040.393
57DAP/reference0.935110.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.698930.035
17DAP/reference0.914040.389
27DAP/reference0.734810.036
39DAP/reference1.147990.512
41DAP/reference1.197330.062
42DAP/reference1.255190.057
43DAP/reference1.210060.186
47DAP/reference1.139810.388
52DAP/reference0.885560.186
57DAP/reference1.180010.233

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.97966
26DAP/20DAP0.883310.317
34DAP/26DAP1.085071
51DAP/34DAP0.779070.184
52DAP/51DAP0.976941
53DAP/52DAP0.938770.587
55DAP/53DAP0.997530.894
57DAP/55DAP1.070430.955
62DAP/57DAP1.121411
68DAP/62DAP0.851210.609
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.026150.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.34870.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.15062
Mature Eggplant/Ripe Tomato0.400381

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.247480.877
1-1-2/M821.134831
12-2/M820.56606
12-4/M821.608060.694
1-3/M821.181481
2-1-1/M821.086990.764
2-1/M821.424050.345
2-6/M820.757671
3-2/M822.155830.717
4-1-1/M820.45276
4-1/M821.0904
4-3-2/M821.027321
4-3/M822.064981
5-3/M820.906021
6-2/M822.12521
6-3/M820.46896
7-1/M820.82849
7-2/M821.2439
9-3-2/M821.308381

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.79963
IL2-6/WTpooled1.080020.788
IL7-5/WTpooled0.66961
IL7-3/WTpooled1.181531
IL12-4/WTpooled1.150190.52
IL1-4/WTpooled0.885680.834
WT/WTpooled0.954081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.889730.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.095911
DC3000/delta hrp 6h1.10739
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.823780.134

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.827160.293
DC3000 delta B/DC3000 delta AB1.003361

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01031
Var 0h1.049520.936
Var 12h I row2-row10.952750.705
Var 12h NI row2-row11.044051
Var 36h I row2-row11.122980.601
Var 36h NI row2-row11.519461
Var 60h I row2-row10.880770.582
Var 60h NI row2-row10.884570.572
Time course 0hI-0hNI1.000861
Time course 12hI-12hNI0.976010.808
Time course 36hI-36hNI1.047490.114
Time course 60hI-60hNI0.839540.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.848181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.870080.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.364111
Manapal/WT (break)1.255021
Manapal/WT (red)0.376180.188