Expression of 1-1-6.4.17.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.73109 | 0.303 |
27DAP/17DAP | 0.84455 | 0.567 |
39DAP/27DAP | 1.18577 | 0.75 |
41DAP/39DAP | 1.21586 | 0.473 |
42DAP/41DAP | 2.32334 | 0.029 |
43DAP/42DAP | 0.92365 | 0.846 |
47DAP/43DAP | 1.17153 | 0.756 |
52DAP/47DAP | 0.87797 | 0.654 |
57DAP/52DAP | 0.90775 | 0.889 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10732 | 1 |
17DAP/reference | 0.93136 | 0.24 |
27DAP/reference | 0.93314 | 0.163 |
39DAP/reference | 1.24272 | 0.02 |
41DAP/reference | 1.20987 | 0.036 |
42DAP/reference | 1.08364 | 0.485 |
43DAP/reference | 1.0014 | 0.882 |
47DAP/reference | 1.00777 | 0.602 |
52DAP/reference | 1.33071 | 0.072 |
57DAP/reference | 1.16472 | 0.379 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10745 | 0.473 |
27DAP/17DAP | 1.07082 | 0.805 |
39DAP/27DAP | 1.3092 | 0.072 |
41DAP/39DAP | 0.82854 | 0.03 |
42DAP/41DAP | 1.17654 | 0.514 |
43DAP/42DAP | 2.03963 | 0.019 |
47DAP/43DAP | 0.82102 | 0.131 |
52DAP/47DAP | 1.40741 | 0.21 |
57DAP/52DAP | 1.26503 | 0.325 |
57DAP/7DAP | 1.60792 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70704 | 0.072 |
17DAP/reference | 0.848 | 0.124 |
27DAP/reference | 0.94678 | 0.283 |
39DAP/reference | 0.76344 | 0.02 |
41DAP/reference | 0.7831 | 0.043 |
42DAP/reference | 0.82581 | 0.066 |
43DAP/reference | 1.16595 | 0.178 |
47DAP/reference | 0.9448 | 0.504 |
52DAP/reference | 1.017 | 1 |
57DAP/reference | 2.25126 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70856 | 0.045 |
17DAP/reference | 1.23636 | 0.644 |
27DAP/reference | 0.92214 | 0.381 |
39DAP/reference | 1.14351 | 0.477 |
41DAP/reference | 1.24905 | 0.038 |
42DAP/reference | 1.16238 | 0.105 |
43DAP/reference | 1.56238 | 0.035 |
47DAP/reference | 0.99987 | 0.678 |
52DAP/reference | 1.20004 | 0.393 |
57DAP/reference | 0.93511 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69893 | 0.035 |
17DAP/reference | 0.91404 | 0.389 |
27DAP/reference | 0.73481 | 0.036 |
39DAP/reference | 1.14799 | 0.512 |
41DAP/reference | 1.19733 | 0.062 |
42DAP/reference | 1.25519 | 0.057 |
43DAP/reference | 1.21006 | 0.186 |
47DAP/reference | 1.13981 | 0.388 |
52DAP/reference | 0.88556 | 0.186 |
57DAP/reference | 1.18001 | 0.233 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97966 | |
26DAP/20DAP | 0.88331 | 0.317 |
34DAP/26DAP | 1.08507 | 1 |
51DAP/34DAP | 0.77907 | 0.184 |
52DAP/51DAP | 0.97694 | 1 |
53DAP/52DAP | 0.93877 | 0.587 |
55DAP/53DAP | 0.99753 | 0.894 |
57DAP/55DAP | 1.07043 | 0.955 |
62DAP/57DAP | 1.12141 | 1 |
68DAP/62DAP | 0.85121 | 0.609 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.02615 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.3487 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.15062 | |
Mature Eggplant/Ripe Tomato | 0.40038 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.24748 | 0.877 |
1-1-2/M82 | 1.13483 | 1 |
12-2/M82 | 0.56606 | |
12-4/M82 | 1.60806 | 0.694 |
1-3/M82 | 1.18148 | 1 |
2-1-1/M82 | 1.08699 | 0.764 |
2-1/M82 | 1.42405 | 0.345 |
2-6/M82 | 0.75767 | 1 |
3-2/M82 | 2.15583 | 0.717 |
4-1-1/M82 | 0.45276 | |
4-1/M82 | 1.0904 | |
4-3-2/M82 | 1.02732 | 1 |
4-3/M82 | 2.06498 | 1 |
5-3/M82 | 0.90602 | 1 |
6-2/M82 | 2.12521 | |
6-3/M82 | 0.46896 | |
7-1/M82 | 0.82849 | |
7-2/M82 | 1.2439 | |
9-3-2/M82 | 1.30838 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79963 | |
IL2-6/WTpooled | 1.08002 | 0.788 |
IL7-5/WTpooled | 0.6696 | 1 |
IL7-3/WTpooled | 1.18153 | 1 |
IL12-4/WTpooled | 1.15019 | 0.52 |
IL1-4/WTpooled | 0.88568 | 0.834 |
WT/WTpooled | 0.95408 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88973 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09591 | 1 |
DC3000/delta hrp 6h | 1.10739 | |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.82378 | 0.134 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.82716 | 0.293 |
DC3000 delta B/DC3000 delta AB | 1.00336 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01031 | |
Var 0h | 1.04952 | 0.936 |
Var 12h I row2-row1 | 0.95275 | 0.705 |
Var 12h NI row2-row1 | 1.04405 | 1 |
Var 36h I row2-row1 | 1.12298 | 0.601 |
Var 36h NI row2-row1 | 1.51946 | 1 |
Var 60h I row2-row1 | 0.88077 | 0.582 |
Var 60h NI row2-row1 | 0.88457 | 0.572 |
Time course 0hI-0hNI | 1.00086 | 1 |
Time course 12hI-12hNI | 0.97601 | 0.808 |
Time course 36hI-36hNI | 1.04749 | 0.114 |
Time course 60hI-60hNI | 0.83954 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.84818 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.87008 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.36411 | 1 |
Manapal/WT (break) | 1.25502 | 1 |
Manapal/WT (red) | 0.37618 | 0.188 |
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