Expression of 1-1-6.4.17.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03530.997
27DAP/17DAP1.140230.88
39DAP/27DAP0.909760.641
41DAP/39DAP1.302170.276
42DAP/41DAP0.965891
43DAP/42DAP1.089940.937
47DAP/43DAP1.090790.934
52DAP/47DAP1.264670.949
57DAP/52DAP0.900350.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.830940.071
17DAP/reference0.9170.147
27DAP/reference0.844440.04
39DAP/reference0.997260.975
41DAP/reference0.811430.018
42DAP/reference0.882590.012
43DAP/reference0.8690.08
47DAP/reference0.904490.071
52DAP/reference1.001520.791
57DAP/reference1.018610.927

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.011710.763
27DAP/17DAP0.80999
39DAP/27DAP0.821150.304
41DAP/39DAPN/AN/A
42DAP/41DAP1.060550.872
43DAP/42DAP1.601820.045
47DAP/43DAP1.233750.444
52DAP/47DAP1.065920.9
57DAP/52DAP0.971910.828
57DAP/7DAP1.328691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028951
17DAP/reference1.121810.328
27DAP/reference1.01511
39DAP/reference0.667960.198
41DAP/reference0.985310.589
42DAP/reference1.1290.889
43DAP/reference1.188360.746
47DAP/reference1.019081
52DAP/reference1.098691
57DAP/reference1.131050.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.771050.021
17DAP/reference0.911560.297
27DAP/reference0.958860.438
39DAP/reference0.910230.208
41DAP/reference0.962690.331
42DAP/reference0.910070.212
43DAP/reference1.077550.957
47DAP/reference0.808290.017
52DAP/reference0.920820.259
57DAP/reference0.889060.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.87850.104
17DAP/reference1.008740.886
27DAP/reference1.02841
39DAP/reference0.976180.591
41DAP/reference0.932950.371
42DAP/reference0.895860.361
43DAP/reference0.888710.158
47DAP/reference0.914790.168
52DAP/reference0.918550.455
57DAP/reference1.160120.279

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.095280.966
26DAP/20DAP0.968771
34DAP/26DAP0.866390.848
51DAP/34DAP1.420570.706
52DAP/51DAP1.7730.036
53DAP/52DAP0.893720.649
55DAP/53DAP1.646010.519
57DAP/55DAP1.013270.935
62DAP/57DAP1.185020.994
68DAP/62DAP1.51330.017
68DAP/14DAP1.265680.059

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.505820.038

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.60259
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.99421
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.21665
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.86019
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.80376
IL2-6/WTpooled0.61531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.34941
IL12-4/WTpooled1.375930.522
IL1-4/WTpooled0.991611
WT/WTpooled0.991631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h2.070180.921
DC3000/delta hrp 6h0.64831
DC3000/delta hrp 12h1.00693
DC3000/delta hrp 24h1.107970.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042351
Var 0h1.069960.594
Var 12h I row2-row11.058620.736
Var 12h NI row2-row10.65680.627
Var 36h I row2-row10.84981
Var 36h NI row2-row11.47961
Var 60h I row2-row11.091621
Var 60h NI row2-row10.68639
Time course 0hI-0hNI1.087550.662
Time course 12hI-12hNI1.512470.554
Time course 36hI-36hNI1.523080.19
Time course 60hI-60hNI1.087370.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.530480.221
transgenic ySAMdc/azygous control (breaker)1.384931
transgenic ySAMdc/azygous control (red)1.266160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.968040.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.083251
Manapal/WT (red)0.737710.181