Expression of 1-1-6.4.17.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89806 | 0.596 |
27DAP/17DAP | 1.2654 | 0.871 |
39DAP/27DAP | 0.97345 | 0.682 |
41DAP/39DAP | 1.04256 | 0.914 |
42DAP/41DAP | 0.80662 | 0.397 |
43DAP/42DAP | 1.03538 | 1 |
47DAP/43DAP | 1.31298 | 0.415 |
52DAP/47DAP | 1.08757 | 0.993 |
57DAP/52DAP | 1.32744 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37368 | 0.011 |
17DAP/reference | 1.03506 | 0.813 |
27DAP/reference | 1.10207 | 0.599 |
39DAP/reference | 1.04898 | 0.76 |
41DAP/reference | 0.85582 | 0.114 |
42DAP/reference | 1.24906 | 0.003 |
43DAP/reference | 0.76792 | 0.022 |
47DAP/reference | 0.67977 | 0.001 |
52DAP/reference | 0.69541 | 0.031 |
57DAP/reference | 0.87997 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85841 | 0.336 |
27DAP/17DAP | 1.01137 | 1 |
39DAP/27DAP | 1.12727 | 0.436 |
41DAP/39DAP | 0.99961 | 1 |
42DAP/41DAP | 1.00505 | 0.85 |
43DAP/42DAP | 1.01514 | 1 |
47DAP/43DAP | 1.09148 | 0.563 |
52DAP/47DAP | 1.06049 | 0.776 |
57DAP/52DAP | 1.19899 | 0.284 |
57DAP/7DAP | 0.86926 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96876 | 0.55 |
17DAP/reference | 0.91931 | 0.295 |
27DAP/reference | 1.46427 | 0.453 |
39DAP/reference | 0.96158 | 0.411 |
41DAP/reference | 1.20882 | 0.46 |
42DAP/reference | 1.18332 | 0.405 |
43DAP/reference | 1.09281 | 1 |
47DAP/reference | 0.98555 | 0.671 |
52DAP/reference | 1.09908 | 0.113 |
57DAP/reference | 1.03404 | 0.804 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26255 | 0.09 |
17DAP/reference | 1.25052 | 0.181 |
27DAP/reference | 0.82876 | 0.1 |
39DAP/reference | 0.78547 | 0.018 |
41DAP/reference | 0.75277 | 0.011 |
42DAP/reference | 1.13648 | 0.254 |
43DAP/reference | 0.74573 | 0.072 |
47DAP/reference | 0.83953 | 0.12 |
52DAP/reference | 0.82586 | 0.037 |
57DAP/reference | 0.58361 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91063 | 0.214 |
17DAP/reference | 0.81978 | 0.144 |
27DAP/reference | 0.96024 | 0.657 |
39DAP/reference | 1.1801 | 0.275 |
41DAP/reference | 1.25564 | 0.013 |
42DAP/reference | 1.37618 | 0.108 |
43DAP/reference | 1.24972 | 0.237 |
47DAP/reference | 0.56742 | 0.005 |
52DAP/reference | 0.84514 | 0.455 |
57DAP/reference | 0.91096 | 0.238 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13111 | 0.752 |
26DAP/20DAP | 1.33177 | 0.39 |
34DAP/26DAP | 1.14241 | 1 |
51DAP/34DAP | 1.36132 | 0.041 |
52DAP/51DAP | 1.19503 | 0.167 |
53DAP/52DAP | 1.1119 | 0.537 |
55DAP/53DAP | 0.96415 | 0.709 |
57DAP/55DAP | 0.90002 | 0.545 |
62DAP/57DAP | 0.98429 | 0.994 |
68DAP/62DAP | 1.57786 | 0.139 |
68DAP/14DAP | 2.09934 | 0.023 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47959 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.61193 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.61499 | 0.096 |
Immature Eggplant/Mature Eggplant | 0.33296 | 0.063 |
Ripe Pepper/Ripe Tomato | 1.03271 | 1 |
Mature Eggplant/Ripe Tomato | 1.04107 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00731 | 1 |
1-1-2/M82 | 0.99286 | 1 |
12-2/M82 | 1.98555 | |
12-4/M82 | 0.77478 | 0.358 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.08698 | |
3-2/M82 | 0.9876 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.02231 | 1 |
5-3/M82 | 0.77128 | 0.419 |
6-2/M82 | 1.12676 | |
6-3/M82 | 1.0954 | 1 |
7-1/M82 | 0.75018 | 0.509 |
7-2/M82 | 0.73623 | 0.57 |
9-3-2/M82 | 1.04316 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.66276 | 0.277 |
IL2-6/WTpooled | 1.44111 | 0.46 |
IL7-5/WTpooled | 1.55773 | 0.792 |
IL7-3/WTpooled | 0.88151 | 0.418 |
IL12-4/WTpooled | 1.36062 | 0.466 |
IL1-4/WTpooled | 1.01485 | 1 |
WT/WTpooled | 0.96106 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92341 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07565 | 0.921 |
DC3000/delta hrp 6h | 1.09837 | 1 |
DC3000/delta hrp 12h | 1.4332 | 1 |
DC3000/delta hrp 24h | 1.21357 | 0.174 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.59143 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.77564 | 1 |
Exp 36h | 0.99192 | 1 |
Exp 60h | 1.04956 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98288 | 1 |
Var 0h | 1.63426 | 0.782 |
Var 12h I row2-row1 | 1.15834 | 0.613 |
Var 12h NI row2-row1 | 1.2224 | 1 |
Var 36h I row2-row1 | 1.12549 | 0.339 |
Var 36h NI row2-row1 | 0.9552 | 0.706 |
Var 60h I row2-row1 | 0.93063 | 0.285 |
Var 60h NI row2-row1 | 1.30917 | 0.904 |
Time course 0hI-0hNI | 0.93437 | 0.634 |
Time course 12hI-12hNI | 1.07532 | 0.709 |
Time course 36hI-36hNI | 1.21322 | 0.01 |
Time course 60hI-60hNI | 1.28011 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.26127 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.3504 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.88134 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98443 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.77185 | 0.14 |
Manapal/WT (break) | 1.35312 | 1 |
Manapal/WT (red) | 0.89584 | 0.315 |
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