Expression of 1-1-6.4.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.898060.596
27DAP/17DAP1.26540.871
39DAP/27DAP0.973450.682
41DAP/39DAP1.042560.914
42DAP/41DAP0.806620.397
43DAP/42DAP1.035381
47DAP/43DAP1.312980.415
52DAP/47DAP1.087570.993
57DAP/52DAP1.327440.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.373680.011
17DAP/reference1.035060.813
27DAP/reference1.102070.599
39DAP/reference1.048980.76
41DAP/reference0.855820.114
42DAP/reference1.249060.003
43DAP/reference0.767920.022
47DAP/reference0.679770.001
52DAP/reference0.695410.031
57DAP/reference0.879970.068

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.858410.336
27DAP/17DAP1.011371
39DAP/27DAP1.127270.436
41DAP/39DAP0.999611
42DAP/41DAP1.005050.85
43DAP/42DAP1.015141
47DAP/43DAP1.091480.563
52DAP/47DAP1.060490.776
57DAP/52DAP1.198990.284
57DAP/7DAP0.869261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968760.55
17DAP/reference0.919310.295
27DAP/reference1.464270.453
39DAP/reference0.961580.411
41DAP/reference1.208820.46
42DAP/reference1.183320.405
43DAP/reference1.092811
47DAP/reference0.985550.671
52DAP/reference1.099080.113
57DAP/reference1.034040.804

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.262550.09
17DAP/reference1.250520.181
27DAP/reference0.828760.1
39DAP/reference0.785470.018
41DAP/reference0.752770.011
42DAP/reference1.136480.254
43DAP/reference0.745730.072
47DAP/reference0.839530.12
52DAP/reference0.825860.037
57DAP/reference0.583610.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910630.214
17DAP/reference0.819780.144
27DAP/reference0.960240.657
39DAP/reference1.18010.275
41DAP/reference1.255640.013
42DAP/reference1.376180.108
43DAP/reference1.249720.237
47DAP/reference0.567420.005
52DAP/reference0.845140.455
57DAP/reference0.910960.238

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.131110.752
26DAP/20DAP1.331770.39
34DAP/26DAP1.142411
51DAP/34DAP1.361320.041
52DAP/51DAP1.195030.167
53DAP/52DAP1.11190.537
55DAP/53DAP0.964150.709
57DAP/55DAP0.900020.545
62DAP/57DAP0.984290.994
68DAP/62DAP1.577860.139
68DAP/14DAP2.099340.023

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.479590.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.611930.176
Mature Green Tomato/Ripe Tomato0.614990.096
Immature Eggplant/Mature Eggplant0.332960.063
Ripe Pepper/Ripe Tomato1.032711
Mature Eggplant/Ripe Tomato1.041071

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007311
1-1-2/M820.992861
12-2/M821.98555
12-4/M820.774780.358
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.08698
3-2/M820.98761
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.022311
5-3/M820.771280.419
6-2/M821.12676
6-3/M821.09541
7-1/M820.750180.509
7-2/M820.736230.57
9-3-2/M821.04316

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.662760.277
IL2-6/WTpooled1.441110.46
IL7-5/WTpooled1.557730.792
IL7-3/WTpooled0.881510.418
IL12-4/WTpooled1.360620.466
IL1-4/WTpooled1.014851
WT/WTpooled0.961061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.923411

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.075650.921
DC3000/delta hrp 6h1.098371
DC3000/delta hrp 12h1.43321
DC3000/delta hrp 24h1.213570.174

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.59143

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.775641
Exp 36h0.991921
Exp 60h1.049561

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982881
Var 0h1.634260.782
Var 12h I row2-row11.158340.613
Var 12h NI row2-row11.22241
Var 36h I row2-row11.125490.339
Var 36h NI row2-row10.95520.706
Var 60h I row2-row10.930630.285
Var 60h NI row2-row11.309170.904
Time course 0hI-0hNI0.934370.634
Time course 12hI-12hNI1.075320.709
Time course 36hI-36hNI1.213220.01
Time course 60hI-60hNI1.280110.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.261270.212
transgenic ySAMdc/azygous control (breaker)1.35040.178
transgenic ySAMdc/azygous control (red)0.881341

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.984430.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.771850.14
Manapal/WT (break)1.353121
Manapal/WT (red)0.895840.315