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Expression of 1-1-6.4.18.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965550.76
27DAP/17DAP1.236720.746
39DAP/27DAP1.21440.87
41DAP/39DAP1.121820.765
42DAP/41DAP1.102330.832
43DAP/42DAP1.039481
47DAP/43DAP0.987350.934
52DAP/47DAP0.851290.572
57DAP/52DAP1.030640.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.912630.136
17DAP/reference0.975390.26
27DAP/reference0.928590.163
39DAP/reference0.951750.24
41DAP/reference0.928840.201
42DAP/reference0.870760.038
43DAP/reference0.99480.882
47DAP/reference0.919270.065
52DAP/reference0.859640.051
57DAP/reference0.847720.062

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.854010.201
27DAP/17DAP0.927570.748
39DAP/27DAP1.373430.186
41DAP/39DAP0.921760.764
42DAP/41DAP0.927710.524
43DAP/42DAP1.272380.045
47DAP/43DAP1.274680.078
52DAP/47DAP0.773240.338
57DAP/52DAP0.916480.541
57DAP/7DAP1.07491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.229930.132
17DAP/reference1.005431
27DAP/reference1.087880.371
39DAP/reference1.15620.012
41DAP/reference1.31370.029
42DAP/reference1.501780.013
43DAP/reference1.360650.012
47DAP/reference1.155230.345
52DAP/reference1.536810.007
57DAP/reference1.627640.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992850.848
17DAP/reference0.851160.023
27DAP/reference0.919230.257
39DAP/reference0.842590.038
41DAP/reference0.839870.047
42DAP/reference0.833450.02
43DAP/reference0.954480.478
47DAP/reference0.875080.019
52DAP/reference0.824670.017
57DAP/reference1.202370.214

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.135150.19
17DAP/reference0.894020.281
27DAP/reference1.043980.596
39DAP/reference1.124270.081
41DAP/reference1.128850.425
42DAP/reference1.252760.272
43DAP/reference1.076390.923
47DAP/reference1.075760.294
52DAP/reference1.42940.097
57DAP/reference0.718360.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.943971
26DAP/20DAP1.00871
34DAP/26DAP1.259141
51DAP/34DAP1.123230.759
52DAP/51DAP1.109040.534
53DAP/52DAP1.302920.284
55DAP/53DAP1.496020.075
57DAP/55DAP1.313540.474
62DAP/57DAP0.567420.01
68DAP/62DAP1.373280.616
68DAP/14DAP1.071710.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.432460.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.933510.563
Mature Green Tomato/Ripe Tomato1.01080.898
Immature Eggplant/Mature Eggplant1.883810.05
Ripe Pepper/Ripe Tomato1.356580.256
Mature Eggplant/Ripe Tomato1.260321

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.204930.526
1-1-2/M821.113181
12-2/M821.234870.61
12-4/M820.908950.619
1-3/M821.394720.479
2-1-1/M821.192710.375
2-1/M820.851260.519
2-6/M821.154050.505
3-2/M820.902130.455
4-1-1/M821.117381
4-1/M820.88962N/A
4-3-2/M821.02661N/A
4-3/M821.150111
5-3/M820.871391
6-2/M820.915930.497
6-3/M820.804770.857
7-1/M820.849220.803
7-2/M821.243430.385
9-3-2/M820.785590.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.71304N/A
IL2-6/WTpooled1.696820.531
IL7-5/WTpooled1.072451
IL7-3/WTpooled0.971481
IL12-4/WTpooled1.124490.695
IL1-4/WTpooled0.981711
WT/WTpooled1.021421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.935670.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.015741
DC3000/delta hrp 6h0.925840.95
DC3000/delta hrp 12h1.012871
DC3000/delta hrp 24h1.127150.113

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.144330.556
DC3000 delta B/DC3000 delta AB1.323920.162

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.139591
Exp 36h0.999621
Exp 60h1.067240.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964851
Var 0h1.041010.98
Var 12h I row2-row11.530.613
Var 12h NI row2-row11.19261N/A
Var 36h I row2-row11.46160.601
Var 36h NI row2-row10.92849N/A
Var 60h I row2-row11.252431
Var 60h NI row2-row10.970921
Time course 0hI-0hNI1.093050.867
Time course 12hI-12hNI0.660160.338
Time course 36hI-36hNI1.522080.014
Time course 60hI-60hNI2.915040.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.796620.246
transgenic ySAMdc/azygous control (breaker)0.726580.173
transgenic ySAMdc/azygous control (red)1.139460.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.044590.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.780620.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.850740.093
Manapal/WT (break)1.547170.183
Manapal/WT (red)0.571220.181