Expression of 1-1-6.4.18.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14979 | 0.512 |
27DAP/17DAP | 1.19169 | 0.842 |
39DAP/27DAP | 1.01943 | 0.899 |
41DAP/39DAP | 1.62847 | 0.181 |
42DAP/41DAP | 1.07656 | 1 |
43DAP/42DAP | 1.25937 | 0.94 |
47DAP/43DAP | 1.16994 | 0.825 |
52DAP/47DAP | 1.01838 | 0.913 |
57DAP/52DAP | 1.12578 | 0.883 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98739 | 0.645 |
17DAP/reference | 1.08584 | 0.068 |
27DAP/reference | 1.01138 | 0.909 |
39DAP/reference | 1.05892 | 0.197 |
41DAP/reference | 1.12278 | 0.085 |
42DAP/reference | 0.90248 | 0.014 |
43DAP/reference | 0.9506 | 0.5 |
47DAP/reference | 0.96888 | 0.345 |
52DAP/reference | 0.7932 | 0.143 |
57DAP/reference | 0.81546 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00485 | 0.899 |
27DAP/17DAP | 1.04541 | 0.826 |
39DAP/27DAP | 0.96986 | 0.622 |
41DAP/39DAP | 1.0148 | 0.876 |
42DAP/41DAP | 0.96593 | 0.695 |
43DAP/42DAP | 1.02011 | 0.585 |
47DAP/43DAP | 0.9703 | 0.815 |
52DAP/47DAP | 0.98631 | 0.925 |
57DAP/52DAP | 0.96074 | 0.524 |
57DAP/7DAP | 0.93093 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.13328 | 0.031 |
17DAP/reference | 1.32185 | 0.014 |
27DAP/reference | 1.13061 | 0.246 |
39DAP/reference | 1.39788 | 0.016 |
41DAP/reference | 1.23319 | 0.207 |
42DAP/reference | 1.28697 | 0.046 |
43DAP/reference | 1.30216 | 0.07 |
47DAP/reference | 0.90634 | 0.293 |
52DAP/reference | 1.23026 | 0.014 |
57DAP/reference | 1.19548 | 0.125 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95965 | 0.399 |
17DAP/reference | 0.99032 | 0.673 |
27DAP/reference | 0.85631 | 0.203 |
39DAP/reference | 0.90424 | 0.147 |
41DAP/reference | 0.87649 | 0.1 |
42DAP/reference | 0.90062 | 0.089 |
43DAP/reference | 0.9363 | 0.414 |
47DAP/reference | 0.96998 | 0.253 |
52DAP/reference | 0.97715 | 0.302 |
57DAP/reference | 1.03551 | 0.724 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.05266 | 0.016 |
17DAP/reference | 1.02982 | 0.855 |
27DAP/reference | 1.21856 | 0.044 |
39DAP/reference | 1.15517 | 0.009 |
41DAP/reference | 0.90801 | 0.293 |
42DAP/reference | 0.87192 | 0.287 |
43DAP/reference | 0.84134 | 0.106 |
47DAP/reference | 0.96471 | 0.452 |
52DAP/reference | 1.09218 | 0.509 |
57DAP/reference | 0.73245 | 0.068 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04571 | 0.966 |
26DAP/20DAP | 1.03017 | 1 |
34DAP/26DAP | 1.01304 | 1 |
51DAP/34DAP | 1.0242 | 0.854 |
52DAP/51DAP | 0.9401 | 1 |
53DAP/52DAP | 0.95811 | 0.83 |
55DAP/53DAP | 0.95537 | 0.663 |
57DAP/55DAP | 1.07792 | 0.865 |
62DAP/57DAP | 1.03322 | 0.935 |
68DAP/62DAP | 0.98295 | 0.834 |
68DAP/14DAP | 0.91819 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85356 | 0.057 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.55247 | 0.112 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.32583 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.19147 | 1 |
Mature Eggplant/Ripe Tomato | 0.92414 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01588 | 1 |
1-1-2/M82 | 0.98634 | 1 |
12-2/M82 | 1.13617 | 1 |
12-4/M82 | 0.98259 | 1 |
1-3/M82 | 0.79257 | 0.441 |
2-1-1/M82 | 1.0625 | 1 |
2-1/M82 | 1.29773 | 1 |
2-6/M82 | 1.11812 | 0.452 |
3-2/M82 | 0.9604 | |
4-1-1/M82 | 0.93129 | 1 |
4-1/M82 | 1.14093 | |
4-3-2/M82 | 0.75147 | |
4-3/M82 | 1.01146 | 1 |
5-3/M82 | 1.0268 | 1 |
6-2/M82 | 0.99446 | 1 |
6-3/M82 | 1.03954 | 1 |
7-1/M82 | 1.00217 | 1 |
7-2/M82 | 1.18355 | 0.299 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.18277 | |
IL2-6/WTpooled | 0.92174 | 1 |
IL7-5/WTpooled | 1.13965 | 0.792 |
IL7-3/WTpooled | 1.0043 | 1 |
IL12-4/WTpooled | 1.23875 | 0.737 |
IL1-4/WTpooled | 0.96868 | 1 |
WT/WTpooled | 1.0188 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2528 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04218 | 0.921 |
DC3000/delta hrp 6h | 1.29648 | 1 |
DC3000/delta hrp 12h | 0.97836 | 1 |
DC3000/delta hrp 24h | 1.05006 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1261 | 0.049 |
DC3000 delta B/DC3000 delta AB | 1.09071 | 0.412 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06103 | 1 |
Exp 36h | 2.00357 | 0.409 |
Exp 60h | 1.34037 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00392 | |
Var 0h | 1.04575 | 1 |
Var 12h I row2-row1 | 1.21544 | 0.196 |
Var 12h NI row2-row1 | 1.07131 | 1 |
Var 36h I row2-row1 | 1.1538 | 1 |
Var 36h NI row2-row1 | 1.19524 | 1 |
Var 60h I row2-row1 | 1.20208 | 1 |
Var 60h NI row2-row1 | 1.15401 | 0.904 |
Time course 0hI-0hNI | 1.03128 | 0.867 |
Time course 12hI-12hNI | 0.9436 | 0.511 |
Time course 36hI-36hNI | 0.95318 | 0.373 |
Time course 60hI-60hNI | 1.09464 | 0.254 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00092 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.38076 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.06451 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02462 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.17958 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.1444 | 0.13 |
Manapal/WT (red) | 0.70638 | 0.216 |
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