Expression of 1-1-6.4.18.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.149790.512
27DAP/17DAP1.191690.842
39DAP/27DAP1.019430.899
41DAP/39DAP1.628470.181
42DAP/41DAP1.076561
43DAP/42DAP1.259370.94
47DAP/43DAP1.169940.825
52DAP/47DAP1.018380.913
57DAP/52DAP1.125780.883

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.987390.645
17DAP/reference1.085840.068
27DAP/reference1.011380.909
39DAP/reference1.058920.197
41DAP/reference1.122780.085
42DAP/reference0.902480.014
43DAP/reference0.95060.5
47DAP/reference0.968880.345
52DAP/reference0.79320.143
57DAP/reference0.815460.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.004850.899
27DAP/17DAP1.045410.826
39DAP/27DAP0.969860.622
41DAP/39DAP1.01480.876
42DAP/41DAP0.965930.695
43DAP/42DAP1.020110.585
47DAP/43DAP0.97030.815
52DAP/47DAP0.986310.925
57DAP/52DAP0.960740.524
57DAP/7DAP0.930931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.133280.031
17DAP/reference1.321850.014
27DAP/reference1.130610.246
39DAP/reference1.397880.016
41DAP/reference1.233190.207
42DAP/reference1.286970.046
43DAP/reference1.302160.07
47DAP/reference0.906340.293
52DAP/reference1.230260.014
57DAP/reference1.195480.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959650.399
17DAP/reference0.990320.673
27DAP/reference0.856310.203
39DAP/reference0.904240.147
41DAP/reference0.876490.1
42DAP/reference0.900620.089
43DAP/reference0.93630.414
47DAP/reference0.969980.253
52DAP/reference0.977150.302
57DAP/reference1.035510.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.052660.016
17DAP/reference1.029820.855
27DAP/reference1.218560.044
39DAP/reference1.155170.009
41DAP/reference0.908010.293
42DAP/reference0.871920.287
43DAP/reference0.841340.106
47DAP/reference0.964710.452
52DAP/reference1.092180.509
57DAP/reference0.732450.068

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.045710.966
26DAP/20DAP1.030171
34DAP/26DAP1.013041
51DAP/34DAP1.02420.854
52DAP/51DAP0.94011
53DAP/52DAP0.958110.83
55DAP/53DAP0.955370.663
57DAP/55DAP1.077920.865
62DAP/57DAP1.033220.935
68DAP/62DAP0.982950.834
68DAP/14DAP0.918191

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.853560.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.552470.112
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant2.325830.05
Ripe Pepper/Ripe Tomato1.191471
Mature Eggplant/Ripe Tomato0.924141

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.015881
1-1-2/M820.986341
12-2/M821.136171
12-4/M820.982591
1-3/M820.792570.441
2-1-1/M821.06251
2-1/M821.297731
2-6/M821.118120.452
3-2/M820.9604
4-1-1/M820.931291
4-1/M821.14093
4-3-2/M820.75147
4-3/M821.011461
5-3/M821.02681
6-2/M820.994461
6-3/M821.039541
7-1/M821.002171
7-2/M821.183550.299
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.18277
IL2-6/WTpooled0.921741
IL7-5/WTpooled1.139650.792
IL7-3/WTpooled1.00431
IL12-4/WTpooled1.238750.737
IL1-4/WTpooled0.968681
WT/WTpooled1.01881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.25281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.042180.921
DC3000/delta hrp 6h1.296481
DC3000/delta hrp 12h0.978361
DC3000/delta hrp 24h1.050060.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.12610.049
DC3000 delta B/DC3000 delta AB1.090710.412

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.061031
Exp 36h2.003570.409
Exp 60h1.340370.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00392
Var 0h1.045751
Var 12h I row2-row11.215440.196
Var 12h NI row2-row11.071311
Var 36h I row2-row11.15381
Var 36h NI row2-row11.195241
Var 60h I row2-row11.202081
Var 60h NI row2-row11.154010.904
Time course 0hI-0hNI1.031280.867
Time course 12hI-12hNI0.94360.511
Time course 36hI-36hNI0.953180.373
Time course 60hI-60hNI1.094640.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.000921
transgenic ySAMdc/azygous control (breaker)1.380760.178
transgenic ySAMdc/azygous control (red)1.064510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.024620.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.179580.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.14440.13
Manapal/WT (red)0.706380.216