Expression of 1-1-6.4.18.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.963110.752
27DAP/17DAP0.993871
39DAP/27DAP0.982780.769
41DAP/39DAP1.230260.591
42DAP/41DAP0.946521
43DAP/42DAP0.896910.759
47DAP/43DAP1.161290.746
52DAP/47DAP1.061730.906
57DAP/52DAP1.413110.817

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.407190.024
17DAP/reference0.482720.008
27DAP/reference0.626230.012
39DAP/reference1.367660.706
41DAP/reference1.03361
42DAP/reference3.788880.001
43DAP/reference3.524240.006
47DAP/reference2.947820.001
52DAP/reference1.36450.018
57DAP/reference2.142050.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.070670.699
27DAP/17DAP1.014511
39DAP/27DAP1.149530.663
41DAP/39DAP0.93110.781
42DAP/41DAP1.146180.47
43DAP/42DAP0.992650.928
47DAP/43DAP1.014421
52DAP/47DAP0.964340.876
57DAP/52DAP0.960640.668
57DAP/7DAP1.1041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.87890.326
17DAP/reference0.825610.014
27DAP/reference1.061530.664
39DAP/reference1.025061
41DAP/reference0.892820.203
42DAP/reference1.082120.889
43DAP/reference1.039220.83
47DAP/reference1.810640.071
52DAP/reference0.891470.115
57DAP/reference0.915730.114

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.528080.009
17DAP/reference0.542630.005
27DAP/reference0.522650.006
39DAP/reference0.496330.012
41DAP/reference0.477320.005
42DAP/reference0.57870.012
43DAP/reference0.785370.152
47DAP/reference0.79570.044
52DAP/reference0.363080.003
57DAP/reference0.490730.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.90480.391
17DAP/reference0.846340.358
27DAP/reference0.99440.727
39DAP/reference0.820660.111
41DAP/reference0.913330.371
42DAP/reference1.559750.158
43DAP/reference3.064230.09
47DAP/reference2.954490.005
52DAP/reference1.343890.779
57DAP/reference2.034360.039

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.013821
26DAP/20DAP1.210060.647
34DAP/26DAP0.951150.917
51DAP/34DAP1.239090.352
52DAP/51DAP0.957061
53DAP/52DAP1.117760.806
55DAP/53DAP1.164581
57DAP/55DAP1.234290.51
62DAP/57DAP1.173510.868
68DAP/62DAP0.775870.345
68DAP/14DAP0.744880.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.838120.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.025171
Mature Green Tomato/Ripe Tomato1.371830.134
Immature Eggplant/Mature Eggplant1.386610.065
Ripe Pepper/Ripe Tomato0.264220.224
Mature Eggplant/Ripe Tomato0.431971

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.13580.877
1-1-2/M821.119271
12-2/M821.159421
12-4/M821.195911
1-3/M821.271551
2-1-1/M821.085441
2-1/M821.236141
2-6/M820.689950.501
3-2/M821.2650.439
4-1-1/M820.983541
4-1/M82N/AN/A
4-3-2/M820.760790.487
4-3/M821.031851
5-3/M821.041271
6-2/M821.20367
6-3/M82N/AN/A
7-1/M821.209910.598
7-2/M821.019981
9-3-2/M820.948861

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.48086
IL2-6/WTpooled0.732770.473
IL7-5/WTpooled1.36464
IL7-3/WTpooled1.267141
IL12-4/WTpooled0.964931
IL1-4/WTpooled1.254560.426
WT/WTpooled1.045021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.146350.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.970391
DC3000/delta hrp 6h0.994250.95
DC3000/delta hrp 12h1.073421
DC3000/delta hrp 24h0.991680.988

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.507710.16
DC3000 delta B/DC3000 delta AB1.24990.149

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.942411
Exp 36h0.966170.943
Exp 60h1.049291

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97111
Var 0h0.989431
Var 12h I row2-row11.011510.692
Var 12h NI row2-row10.99081
Var 36h I row2-row11.960691
Var 36h NI row2-row10.907950.706
Var 60h I row2-row10.723790.285
Var 60h NI row2-row11.037570.904
Time course 0hI-0hNI1.057480.63
Time course 12hI-12hNI1.039350.734
Time course 36hI-36hNI1.091480.218
Time course 60hI-60hNI1.693990.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.670580.255
transgenic ySAMdc/azygous control (breaker)0.993651
transgenic ySAMdc/azygous control (red)0.982251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.22680.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.752840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.954851
Manapal/WT (break)1.160170.381
Manapal/WT (red)1.043711