Expression of 1-1-6.4.18.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96311 | 0.752 |
27DAP/17DAP | 0.99387 | 1 |
39DAP/27DAP | 0.98278 | 0.769 |
41DAP/39DAP | 1.23026 | 0.591 |
42DAP/41DAP | 0.94652 | 1 |
43DAP/42DAP | 0.89691 | 0.759 |
47DAP/43DAP | 1.16129 | 0.746 |
52DAP/47DAP | 1.06173 | 0.906 |
57DAP/52DAP | 1.41311 | 0.817 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.40719 | 0.024 |
17DAP/reference | 0.48272 | 0.008 |
27DAP/reference | 0.62623 | 0.012 |
39DAP/reference | 1.36766 | 0.706 |
41DAP/reference | 1.0336 | 1 |
42DAP/reference | 3.78888 | 0.001 |
43DAP/reference | 3.52424 | 0.006 |
47DAP/reference | 2.94782 | 0.001 |
52DAP/reference | 1.3645 | 0.018 |
57DAP/reference | 2.14205 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07067 | 0.699 |
27DAP/17DAP | 1.01451 | 1 |
39DAP/27DAP | 1.14953 | 0.663 |
41DAP/39DAP | 0.9311 | 0.781 |
42DAP/41DAP | 1.14618 | 0.47 |
43DAP/42DAP | 0.99265 | 0.928 |
47DAP/43DAP | 1.01442 | 1 |
52DAP/47DAP | 0.96434 | 0.876 |
57DAP/52DAP | 0.96064 | 0.668 |
57DAP/7DAP | 1.104 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8789 | 0.326 |
17DAP/reference | 0.82561 | 0.014 |
27DAP/reference | 1.06153 | 0.664 |
39DAP/reference | 1.02506 | 1 |
41DAP/reference | 0.89282 | 0.203 |
42DAP/reference | 1.08212 | 0.889 |
43DAP/reference | 1.03922 | 0.83 |
47DAP/reference | 1.81064 | 0.071 |
52DAP/reference | 0.89147 | 0.115 |
57DAP/reference | 0.91573 | 0.114 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.52808 | 0.009 |
17DAP/reference | 0.54263 | 0.005 |
27DAP/reference | 0.52265 | 0.006 |
39DAP/reference | 0.49633 | 0.012 |
41DAP/reference | 0.47732 | 0.005 |
42DAP/reference | 0.5787 | 0.012 |
43DAP/reference | 0.78537 | 0.152 |
47DAP/reference | 0.7957 | 0.044 |
52DAP/reference | 0.36308 | 0.003 |
57DAP/reference | 0.49073 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9048 | 0.391 |
17DAP/reference | 0.84634 | 0.358 |
27DAP/reference | 0.9944 | 0.727 |
39DAP/reference | 0.82066 | 0.111 |
41DAP/reference | 0.91333 | 0.371 |
42DAP/reference | 1.55975 | 0.158 |
43DAP/reference | 3.06423 | 0.09 |
47DAP/reference | 2.95449 | 0.005 |
52DAP/reference | 1.34389 | 0.779 |
57DAP/reference | 2.03436 | 0.039 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01382 | 1 |
26DAP/20DAP | 1.21006 | 0.647 |
34DAP/26DAP | 0.95115 | 0.917 |
51DAP/34DAP | 1.23909 | 0.352 |
52DAP/51DAP | 0.95706 | 1 |
53DAP/52DAP | 1.11776 | 0.806 |
55DAP/53DAP | 1.16458 | 1 |
57DAP/55DAP | 1.23429 | 0.51 |
62DAP/57DAP | 1.17351 | 0.868 |
68DAP/62DAP | 0.77587 | 0.345 |
68DAP/14DAP | 0.74488 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.83812 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02517 | 1 |
Mature Green Tomato/Ripe Tomato | 1.37183 | 0.134 |
Immature Eggplant/Mature Eggplant | 1.38661 | 0.065 |
Ripe Pepper/Ripe Tomato | 0.26422 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.43197 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1358 | 0.877 |
1-1-2/M82 | 1.11927 | 1 |
12-2/M82 | 1.15942 | 1 |
12-4/M82 | 1.19591 | 1 |
1-3/M82 | 1.27155 | 1 |
2-1-1/M82 | 1.08544 | 1 |
2-1/M82 | 1.23614 | 1 |
2-6/M82 | 0.68995 | 0.501 |
3-2/M82 | 1.265 | 0.439 |
4-1-1/M82 | 0.98354 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.76079 | 0.487 |
4-3/M82 | 1.03185 | 1 |
5-3/M82 | 1.04127 | 1 |
6-2/M82 | 1.20367 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.20991 | 0.598 |
7-2/M82 | 1.01998 | 1 |
9-3-2/M82 | 0.94886 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.48086 | |
IL2-6/WTpooled | 0.73277 | 0.473 |
IL7-5/WTpooled | 1.36464 | |
IL7-3/WTpooled | 1.26714 | 1 |
IL12-4/WTpooled | 0.96493 | 1 |
IL1-4/WTpooled | 1.25456 | 0.426 |
WT/WTpooled | 1.04502 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14635 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97039 | 1 |
DC3000/delta hrp 6h | 0.99425 | 0.95 |
DC3000/delta hrp 12h | 1.07342 | 1 |
DC3000/delta hrp 24h | 0.99168 | 0.988 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.50771 | 0.16 |
DC3000 delta B/DC3000 delta AB | 1.2499 | 0.149 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94241 | 1 |
Exp 36h | 0.96617 | 0.943 |
Exp 60h | 1.04929 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9711 | 1 |
Var 0h | 0.98943 | 1 |
Var 12h I row2-row1 | 1.01151 | 0.692 |
Var 12h NI row2-row1 | 0.9908 | 1 |
Var 36h I row2-row1 | 1.96069 | 1 |
Var 36h NI row2-row1 | 0.90795 | 0.706 |
Var 60h I row2-row1 | 0.72379 | 0.285 |
Var 60h NI row2-row1 | 1.03757 | 0.904 |
Time course 0hI-0hNI | 1.05748 | 0.63 |
Time course 12hI-12hNI | 1.03935 | 0.734 |
Time course 36hI-36hNI | 1.09148 | 0.218 |
Time course 60hI-60hNI | 1.69399 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.67058 | 0.255 |
transgenic ySAMdc/azygous control (breaker) | 0.99365 | 1 |
transgenic ySAMdc/azygous control (red) | 0.98225 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.2268 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75284 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95485 | 1 |
Manapal/WT (break) | 1.16017 | 0.381 |
Manapal/WT (red) | 1.04371 | 1 |
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